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表面诱导解离产生20S蛋白酶体复合物的亚结构。

Surface induced dissociation yields substructure of 20S proteasome complexes.

作者信息

Ma Xin, Loo Joseph A, Wysocki Vicki H

机构信息

Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States.

Department of Biological Chemistry, Department of Chemistry & Biochemistry, and UCLA/DOE Institute for Genomics and Proteomics, University of California, Los Angeles, Los Angeles, California 90095, United States.

出版信息

Int J Mass Spectrom. 2015 Feb 1;377:201-204. doi: 10.1016/j.ijms.2014.09.011.

Abstract

Native mass spectrometry (MS) and surface induced dissociation (SID) have been applied to study the stoichiometry and quaternary structure of non-covalent protein complexes. In this study, 20S proteasome, which consists of four stacked heptameric rings (αββα symmetry), has been selected to explore the SID dissociation pattern of a complicated stacked ring protein complex. SID produces both α and β subunits while collision induced dissociation (CID) produces only highly charged α subunit. In addition, the charge reduced 20S proteasome produces the αβ fragment, reflecting the stacked ring topology of the complex. The combination of SID and charge reduction is shown to be a powerful tool for the study of protein complex structure.

摘要

原生质谱(MS)和表面诱导解离(SID)已被应用于研究非共价蛋白质复合物的化学计量和四级结构。在本研究中,由四个堆叠的七聚体环(αββα对称性)组成的20S蛋白酶体被选来探索复杂堆叠环蛋白质复合物的SID解离模式。SID产生α和β亚基,而碰撞诱导解离(CID)仅产生高电荷的α亚基。此外,电荷减少的20S蛋白酶体产生αβ片段,反映了复合物的堆叠环拓扑结构。结果表明,SID和电荷减少的结合是研究蛋白质复合物结构的有力工具。

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本文引用的文献

1
Effects of polarity on the structures and charge states of native-like proteins and protein complexes in the gas phase.
Anal Chem. 2013 Dec 17;85(24):12055-61. doi: 10.1021/ac403139d. Epub 2013 Nov 21.
3
Allosteric mechanisms can be distinguished using structural mass spectrometry.
Proc Natl Acad Sci U S A. 2013 Apr 30;110(18):7235-9. doi: 10.1073/pnas.1302395110. Epub 2013 Apr 15.
4
Why do GroEL ions exhibit two gas phase conformers?
J Am Soc Mass Spectrom. 2012 Dec;23(12):2115-21. doi: 10.1007/s13361-012-0454-3. Epub 2012 Oct 6.
6
Do charge state signatures guarantee protein conformations?
J Am Soc Mass Spectrom. 2012 Jul;23(7):1161-8. doi: 10.1007/s13361-012-0393-z. Epub 2012 May 5.
7
8
Proteasomes and protein conjugation across domains of life.
Nat Rev Microbiol. 2011 Dec 19;10(2):100-11. doi: 10.1038/nrmicro2696.
9
Enhancements in travelling wave ion mobility resolution.
Rapid Commun Mass Spectrom. 2011 Jun 15;25(11):1559-66. doi: 10.1002/rcm.5013.
10
Tandem differential mobility analysis-mass spectrometry reveals partial gas-phase collapse of the GroEL complex.
J Phys Chem B. 2011 Apr 7;115(13):3614-21. doi: 10.1021/jp109172k. Epub 2011 Mar 11.

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