• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

水在渗透溶质诱导发夹结构变化中的作用:分子动力学模拟研究。

Water plays an important role in osmolyte-induced hairpin structure change: a molecular dynamics simulation study.

机构信息

Drug Discovery and Design Center, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai 201203, China.

出版信息

J Chem Phys. 2012 Oct 14;137(14):145101. doi: 10.1063/1.4757419.

DOI:10.1063/1.4757419
PMID:23061865
Abstract

To investigate how solvent (water) and cosolvent (osmolyte) affect protein structure in various osmolyte solutions, in the present study we used GB1p peptide as the model protein to study its folding process in 2,2,2-trifluoroethanol (TFE)∕water and denaturation process in GdmSCN∕water solutions, respectively. It was observed that TFE moderately enhances the structure stability of native β-hairpin, consistent with the previous experimental observation that the hairpin conformation population of several polypeptides is increased in TFE∕water solution compared to in pure water. More interestingly, the formation of β-hairpin is significantly accelerated in TFE∕water solution. The accelerated folding of β-hairpin consists of following sequential events: the accumulation of TFE on protein surface → less water surrounding carbonyl group (easier dehydration of CO) → the formation of CO-NH backbone hydrogen bond. In contrary, the denaturation of hairpin structure of GB1p peptide in GdmSCN∕water solution is induced by the accumulation of Gdm(+) on protein surface and the hydrogen bonding from water as well as Gdm(+). Therefore, this study shows the importance of water in TFE-induced formation and Gdm(+)-induced denaturation of β-hairpin structure.

摘要

为了研究溶剂(水)和共溶剂(渗透剂)在各种渗透剂溶液中如何影响蛋白质结构,本研究以 GB1p 肽作为模型蛋白,分别研究其在 2,2,2-三氟乙醇(TFE)/水和在 GdmSCN/水中的变性过程中的折叠过程。结果表明,TFE 适度增强了天然 β-发夹结构的稳定性,与之前的实验观察结果一致,即在 TFE/水溶液中,与纯水中相比,几种多肽的发夹构象群体增加。更有趣的是,β-发夹在 TFE/水溶液中的形成明显加快。β-发夹的加速折叠包括以下顺序事件:TFE 在蛋白质表面的积累→羰基周围的水减少(更容易脱去 CO)→CO-NH 骨架氢键的形成。相反,GB1p 肽在 GdmSCN/水溶液中的发夹结构的变性是由蛋白质表面上 Gdm(+)的积累以及来自水和 Gdm(+)的氢键引起的。因此,本研究表明了水在 TFE 诱导的β-发夹形成和 Gdm(+)诱导的β-发夹变性中的重要性。

相似文献

1
Water plays an important role in osmolyte-induced hairpin structure change: a molecular dynamics simulation study.水在渗透溶质诱导发夹结构变化中的作用:分子动力学模拟研究。
J Chem Phys. 2012 Oct 14;137(14):145101. doi: 10.1063/1.4757419.
2
Methanol concentration dependent protein denaturing ability of guanidinium/methanol mixed solution.胍盐/甲醇混合溶液的甲醇浓度依赖性蛋白质变性能力
J Phys Chem B. 2014 Jun 12;118(23):6175-85. doi: 10.1021/jp500280v. Epub 2014 May 30.
3
Structure change of β-hairpin induced by turn optimization: an enhanced sampling molecular dynamics simulation study.β-发夹结构由转角优化引起的变化:增强采样分子动力学模拟研究。
J Chem Phys. 2011 Dec 21;135(23):235104. doi: 10.1063/1.3668288.
4
The addition of 2,2,2-trifluoroethanol prevents the aggregation of guanidinium around protein and impairs its denaturation ability: a molecular dynamics simulation study.2,2,2-三氟乙醇的添加可防止胍盐在蛋白质周围聚集并削弱其变性能力:一项分子动力学模拟研究。
Proteins. 2014 Jun;82(6):944-53. doi: 10.1002/prot.24468. Epub 2013 Nov 22.
5
Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.剖析在水中折叠的β-发夹肽的稳定性:β-转角和β-链对折叠贡献的核磁共振和分子动力学分析
J Mol Biol. 1999 Oct 8;292(5):1051-69. doi: 10.1006/jmbi.1999.3119.
6
Beta-hairpin formation in aqueous solution and in the presence of trifluoroethanol: a (1)H and (13)C nuclear magnetic resonance conformational study of designed peptides.在水溶液以及三氟乙醇存在的情况下β-发夹结构的形成:对设计肽段的(1)H和(13)C核磁共振构象研究
Biopolymers. 2005 Oct 15;79(3):150-62. doi: 10.1002/bip.20345.
7
Does trifluoroethanol affect folding pathways and can it be used as a probe of structure in transition states?三氟乙醇会影响折叠途径吗?它能否用作过渡态结构的探针?
Nat Struct Biol. 1999 Sep;6(9):831-5. doi: 10.1038/12287.
8
The effects of side chain hydrophobicity on the denaturation of simple beta-hairpins.侧链疏水性对简单β发夹结构变性的影响。
Phys Chem Chem Phys. 2010 Aug 28;12(32):9292-9. doi: 10.1039/b924593f. Epub 2010 Jun 23.
9
2,2,2-Trifluoroethanol induces helical conformation in an all beta-sheet protein.2,2,2-三氟乙醇可诱导全β-折叠蛋白形成螺旋构象。
Biochem Biophys Res Commun. 1996 May 6;222(1):33-7. doi: 10.1006/bbrc.1996.0693.
10
Molecular dynamics simulations of a beta-hairpin fragment of protein G: balance between side-chain and backbone forces.蛋白质G的β-发夹片段的分子动力学模拟:侧链与主链力之间的平衡
J Mol Biol. 2000 Mar 3;296(4):1091-104. doi: 10.1006/jmbi.2000.3518.

引用本文的文献

1
Novel Insights into the Catalytic Mechanism of Collagenolysis by Zn(II)-Dependent Matrix Metalloproteinase-1.锌离子依赖型基质金属蛋白酶-1 介导的胶原降解的催化机制的新见解。
Biochemistry. 2024 Aug 6;63(15):1925-1940. doi: 10.1021/acs.biochem.4c00076. Epub 2024 Jul 4.
2
Phase separation propensity of the intrinsically disordered AB region of human RXRβ.人 RXRβ 无规卷曲 AB 区的相分离倾向。
Cell Commun Signal. 2023 May 4;21(1):92. doi: 10.1186/s12964-023-01113-4.