State Key Laboratory of Pollution Control and Resources Reuse, School of the Environment, Nanjing University, Nanjing 210046, PR China.
J Mol Graph Model. 2012 Sep;38:396-410. doi: 10.1016/j.jmgm.2012.05.008. Epub 2012 Jun 12.
Polyhydroxylated dibenzofuran (PHODF) is an important degradation product of polychlorinated dibenzofuran (PCDF). Four types of hydrogen bonds (the one between a hydroxyl and the oxygen atom in the matrix, between hydroxyls at ortho positions, between the oxygen atom of hydroxyl at position 1 and the hydrogen atom of the matrix at position 9, and between hydroxyls at positions 1 and 9) exist in PHODFs. The energies of the hydrogen bonds were ascertained by comparing the two configurational isomers as approximately 8-11 kJ mol⁻¹, 16-21 kJ mol⁻¹, 5-8 kJ mol⁻¹ and 23-25 kJ mol⁻¹, respectively. An experiment was designed to verify the bond energies, and the entrance geometry on main paths was studied by AIM 2000 program. The most stable in each group of configurational isomers was ascertained on the basis of evaluating the effect of hydrogen bonds. Their thermodynamic properties (standard state entropy S°, standard enthalpy Δ(f)H° and standard Gibbs energy of formation Δ(f)G°) were calculated from the combination of density functional theory (DFT) at B3LYP/6-311G** level and isodesmic reactions. Octanol/water partition coefficients (log K(ow)) were calculated on line with molinspiration methodology based on group contributions. The number and position of hydroxyl substitution (N(PHOS)) can be a good indicator of these properties for all stable PHODF congeners. The configurations most likely to form are those with a hydrogen bond (Type IV). How intramolecular hydrogen bond influences ionization was also investigated and the first-order ionization constant for each stable conformation was obtained with the self-consistent reaction field (SCRF) method.
多羟基二苯并呋喃(PHODF)是多氯二苯并呋喃(PCDF)的重要降解产物。在 PHODFs 中存在四种氢键(一个羟基与基质中的氧原子之间的氢键、邻位羟基之间的氢键、位置 1 上的羟基的氧原子与位置 9 上的基质氢原子之间的氢键、位置 1 和 9 上的羟基之间的氢键)。通过比较两种构象异构体,确定氢键的能量约为 8-11 kJ mol⁻¹、16-21 kJ mol⁻¹、5-8 kJ mol⁻¹和 23-25 kJ mol⁻¹。设计了一个实验来验证键能,并通过 AIM 2000 程序研究了主路径上的入口几何形状。根据氢键的影响,确定了每组构象异构体中最稳定的构型。基于密度泛函理论(DFT)在 B3LYP/6-311G**水平上与等电子反应的组合,计算了它们的热力学性质(标准状态熵 S°、标准生成焓 Δ(f)H°和标准生成自由能 Δ(f)G°)。根据基团贡献,在线使用 molinspiration 方法计算了辛醇/水分配系数(log K(ow))。羟基取代的数量和位置(N(PHOS))可以很好地指示所有稳定的 PHODF 同系物的这些性质。最有可能形成的构型是具有氢键(类型 IV)的构型。还研究了分子内氢键对电离的影响,并通过自洽反应场(SCRF)方法获得了每个稳定构象的一级电离常数。