Department of Chemical Informatics, Faculty of Education, University of Szeged, Boldogasszony sgt. 6. 6725, Szeged, Hungary.
J Phys Chem B. 2011 Sep 29;115(38):11269-77. doi: 10.1021/jp2049525. Epub 2011 Sep 6.
All possible X-H (where X can be C, N, O or S) bond dissociation energies (BDEs) of glutathione (γ-L-glutamyl-L-cysteinyl-glycine, GSH) and its fragments have been calculated by first principle methods, and the antioxidant potential of GSH was revealed to be higher than expected in earlier studies. Electron delocalization was found to have an important influence on the antioxidant potential. All structures were optimized and their harmonic vibrational frequencies were calculated in the gas phase at the B3LYP/6-31G(d) level of theory. Solvent effects were taken into account for optimizations at the same level of theory by applying the conductor-like polarizable continuum model (CPCM). Hydrogen cleavage from glutathione proved that the G3MP2B3 composite method provides results consistent with the experimental values for bond dissociation enthalpies (DH(298)) of S-H, O-H, C-H, and N-H bonds. In order to replace the G3MP2B3 energies with accurate single point calculations, six density functionals, namely, MPWKCIS, MPWKCIS1K, M06, TPSS1KCIS, TPSSh, and B3LYP, were tested against G3MP2B3 for obtaining accurate bond dissociation energies. The MPWKCIS1K/6-311++G(3df,2p)//B3LYP/6-31G(d) level of theory provides the best correlation with the G3MP2B3 method for BDEs in both phases, and therefore, it is recommended for similar calculations. Gas phase results showed that the O-H bond was the weakest, while in aqueous phase the N-H bond in the ammonium group proved to have the smallest BDE value in the studied system. In both cases, the cleavage of the X-H bond was followed by decarboxylation which was responsible for the energetic preference of these processes over the S-H dissociation, which was regarded as the most favorable one until now. The calculated BDE values showed that in aqueous phase the most preferred H-abstraction site is at the weakest N-H bond (BDE(aq) = 349.3 kJ mol(-1)) in the glutamine fragment near the α-carbon. In water, the formation of N-centered radicals compared to S-centered ones (BDE(aq) = 351.7 kJ mol(-1)) is more endothermic by 2.54 kJ mol(-1), due to decarboxylation. Hydrogen dissociation energies from the α-carbons are also comparable in energy with those of the thiol hydrogen, within computational error. The higher stability of the radicals--except the S-centered ones--is due to various degrees of electron delocalization. In aqueous phase, four quasi-equivalent stable radical centers (the α-carbons, the N-centered radical of the NH(2) group, and the S-centered radical) were found which provide the antioxidant behavior of glutathione.
所有可能的 X-H(其中 X 可以是 C、N、O 或 S)键离解能(BDE)的谷胱甘肽(γ-L-谷氨酰-L-半胱氨酸-甘氨酸,GSH)及其片段已经通过第一性原理方法计算,并且抗氧化潜力 GSH 被证明比早期研究中预期的要高。电子离域被发现对抗氧化潜力有重要影响。所有结构均在气相中以 B3LYP/6-31G(d)理论水平进行优化,并计算其谐波振动频率。通过在同一理论水平上应用导体相似极化连续模型(CPCM)考虑溶剂效应来优化。从谷胱甘肽中裂解出氢表明,G3MP2B3 复合方法提供的结果与 S-H、O-H、C-H 和 N-H 键的键离解焓(DH(298))的实验值一致。为了用准确的单点计算代替 G3MP2B3 能量,测试了六种密度泛函,即 MPWKCIS、MPWKCIS1K、M06、TPSS1KCIS、TPSSh 和 B3LYP,以获得准确的键离解能。MPWKCIS1K/6-311++G(3df,2p)//B3LYP/6-31G(d)理论水平为 BDE 提供了与 G3MP2B3 方法在两相中最好的相关性,因此,建议用于类似的计算。气相结果表明,O-H 键是最弱的,而在水相中,铵基团中的 N-H 键在研究体系中证明具有最小的 BDE 值。在这两种情况下,X-H 键的裂解都伴随着脱羧,这使得这些过程比 S-H 离解更具能量优势,到目前为止,S-H 离解一直被认为是最有利的。计算得到的 BDE 值表明,在水相,最优先的 H 提取位置是在谷氨酸片段中靠近α-碳的最弱的 N-H 键(BDE(aq) = 349.3 kJ mol(-1))。在水中,与 S 中心自由基相比,N 中心自由基的形成(BDE(aq) = 351.7 kJ mol(-1))更加吸热,这是由于脱羧作用。α-碳上的氢离解能与硫醇氢的离解能也在计算误差范围内相当。除了 S 中心自由基外,自由基的稳定性更高,这是由于电子离域程度不同。在水相,发现了四个准等效的稳定自由基中心(α-碳、NH(2)基团的 N 中心自由基和 S 中心自由基),它们提供了谷胱甘肽的抗氧化行为。