Viral Mutation Section, HIV Drug Resistance Program, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
J Virol. 2013 Jan;87(1):444-53. doi: 10.1128/JVI.00676-12. Epub 2012 Oct 24.
APOBEC3 proteins inhibit HIV-1 replication in experimental systems and induce hypermutation in infected patients; however, the relative contributions of several APOBEC3 proteins to restriction of HIV-1 replication in the absence of the viral Vif protein in human primary CD4(+) T cells and macrophages are unknown. We observed significant inhibition of HIV-1Δvif produced in 293T cells in the presence of APOBEC3DE (A3DE), APOBEC3F (A3F), APOBEC3G (A3G), and APOBEC3H haplotype II (A3H HapII) but not APOBEC3B (A3B), APOBEC3C (A3C), or APOBEC3H haplotype I (A3H HapI). Our previous studies showed that Vif amino acids Y(40)RHHY(44) are important for inducing proteasomal degradation of A3G, whereas amino acids (14)DRMR(17) are important for degradation of A3F and A3DE. Here, we introduced substitution mutations of (40)YRHHY(44) and (14)DRMR(17) in replication-competent HIV-1 to generate vif mutants NL4-3 YRHHY>A5 and NL4-3 DRMR>A4 to compare the antiviral activity of A3G to the combined antiviral activity of A3F and A3DE in activated CD4(+) T cells and macrophages. During the first 15 days (round 1), in which multiple cycles of viral replication occurred, both the NL4-3 YRHHY>A5 and NL4-3 DRMR>A4 mutants replicated in activated CD4(+) T cells and macrophages, and only the NL4-3 YRHHY>A5 mutant showed a 2- to 4-day delay in replication compared to the wild type. During the subsequent 27 days (round 2) of cultures initiated with peak virus obtained from round 1, the NL4-3 YRHHY>A5 mutant exhibited a longer, 8- to 10-day delay and the NL4-3 DRMR>A4 mutant exhibited a 2- to 6-day delay in replication compared to the wild type. The NL4-3 YRHHY>A5 and NL4-3 DRMR>A4 mutant proviruses displayed G-to-A hypermutations primarily in GG and GA dinucleotides as expected of A3G- and A3F- or A3DE-mediated deamination, respectively. We conclude that A3G exerts a greater restriction effect on HIV-1 than A3F and A3DE.
APOBEC3 蛋白在实验系统中抑制 HIV-1 的复制,并在感染患者中诱导高突变;然而,在没有病毒 Vif 蛋白的情况下,几种 APOBEC3 蛋白对 HIV-1 在人原代 CD4(+)T 细胞和巨噬细胞中的限制作用尚不清楚。我们观察到在存在 APOBEC3DE(A3DE)、APOBEC3F(A3F)、APOBEC3G(A3G)和 APOBEC3H 单倍型 II(A3H HapII)的情况下,293T 细胞中产生的 HIV-1Δvif 受到显著抑制,但 APOBEC3B(A3B)、APOBEC3C(A3C)或 APOBEC3H 单倍型 I(A3H HapI)则不受抑制。我们之前的研究表明,Vif 氨基酸 Y(40)RHHY(44)对于诱导 A3G 的蛋白酶体降解很重要,而氨基酸(14)DRMR(17)对于 A3F 和 A3DE 的降解很重要。在这里,我们在复制有效的 HIV-1 中引入了(40)YRHHY(44)和(14)DRMR(17)的取代突变,以产生 vif 突变体 NL4-3 YRHHY>A5 和 NL4-3 DRMR>A4,以比较 A3G 的抗病毒活性与 A3F 和 A3DE 在激活的 CD4(+)T 细胞和巨噬细胞中的联合抗病毒活性。在第一个 15 天(第 1 轮)中,发生了多次病毒复制循环,NL4-3 YRHHY>A5 和 NL4-3 DRMR>A4 突变体都在激活的 CD4(+)T 细胞和巨噬细胞中复制,只有 NL4-3 YRHHY>A5 突变体与野生型相比复制延迟了 2-4 天。在随后的第 27 天(第 2 轮)中,从第 1 轮获得的峰值病毒开始培养,NL4-3 YRHHY>A5 突变体的复制延迟了 8-10 天,而 NL4-3 DRMR>A4 突变体的复制延迟了 2-6 天。NL4-3 YRHHY>A5 和 NL4-3 DRMR>A4 突变原病毒主要在 GG 和 GA 二核苷酸中显示 G-to-A 高突变,这与 A3G 和 A3F 或 A3DE 介导的脱氨作用分别预期的一致。我们得出结论,A3G 对 HIV-1 的限制作用大于 A3F 和 A3DE。