Suppr超能文献

甘油抑制恶性疟原虫水通道蛋白 aquaglyceroporin 对水的通透。

Glycerol inhibits water permeation through Plasmodium falciparum aquaglyceroporin.

机构信息

Department of Physics, University of Texas at San Antonio, One UTSA Circle, San Antonio, TX 78249, USA.

出版信息

J Struct Biol. 2013 Jan;181(1):71-6. doi: 10.1016/j.jsb.2012.10.007. Epub 2012 Oct 26.

Abstract

Plasmodium falciparum aquaglyceroporin (PfAQP) is a multifunctional membrane protein in the plasma membrane of P. falciparum, the parasite that causes the most severe form of malaria. The current literature has established the science of PfAQP's structure, functions, and hydrogen-bonding interactions but left unanswered the following fundamental question: does glycerol modulate water permeation through aquaglyceroporin that conducts both glycerol and water? This paper provides an affirmative answer to this question of essential importance to the protein's functions. On the basis of the chemical-potential profile of glycerol from the extracellular bulk region, throughout PfAQP's conducting channel, to the cytoplasmic bulk region, this study shows the existence of a bound state of glycerol inside aquaglyceroporin's permeation pore, from which the dissociation constant is approximately 14μM. A glycerol molecule occupying the bound state occludes the conducting pore through which permeating molecules line up in single file by hydrogen-bonding with one another and with the luminal residues of aquaglyceroporin. In this way, glycerol inhibits permeation of water and other permeants through aquaglyceroporin. The biological implications of this theory are discussed and shown to agree with the existent in vitro data. It turns out that the structure of aquaglyceroporin is perfect for the van der Waals interactions between the protein and glycerol to cause the existence of the bound state deep inside the conducting pore and, thus to play an unexpected but significant role in aquaglyceroporin's functions.

摘要

疟原虫aquaglyceroporin(PfAQP)是疟原虫(寄生虫,可导致最严重的疟疾)质膜中的一种多功能膜蛋白。目前的文献已经确立了 PfAQP 的结构、功能和氢键相互作用的科学,但仍未回答以下基本问题:甘油是否调节aquaglyceroporin 中的水渗透,而 aquaglyceroporin 既可以传导甘油又可以传导水?本文对这一问题做出了肯定的回答,这对该蛋白的功能至关重要。本研究基于从细胞外基质区域到 PfAQP 传导通道再到细胞质基质区域的甘油化学势分布,展示了在 aquaglyceroporin 的渗透孔内存在甘油的结合态,其离解常数约为 14μM。占据结合态的甘油分子通过与彼此以及 aquaglyceroporin 的腔侧残基形成氢键,阻塞了传导孔,从而阻止水和其他渗透物通过 aquaglyceroporin 的渗透。本文讨论了这一理论的生物学意义,并表明其与现有的体外数据一致。事实证明,aquaglyceroporin 的结构非常适合蛋白和甘油之间的范德华相互作用,从而导致结合态在传导孔深处的存在,因此在 aquaglyceroporin 的功能中发挥了意想不到但却非常重要的作用。

相似文献

1
Glycerol inhibits water permeation through Plasmodium falciparum aquaglyceroporin.
J Struct Biol. 2013 Jan;181(1):71-6. doi: 10.1016/j.jsb.2012.10.007. Epub 2012 Oct 26.
2
Molecular dissection of water and glycerol permeability of the aquaglyceroporin from Plasmodium falciparum by mutational analysis.
Proc Natl Acad Sci U S A. 2004 Feb 3;101(5):1153-8. doi: 10.1073/pnas.0307295101. Epub 2004 Jan 20.
3
Dynamics and energetics of solute permeation through the Plasmodium falciparum aquaglyceroporin.
Phys Chem Chem Phys. 2010 Sep 21;12(35):10246-54. doi: 10.1039/c004384m. Epub 2010 Jul 7.
4
A single, bi-functional aquaglyceroporin in blood-stage Plasmodium falciparum malaria parasites.
J Biol Chem. 2002 Feb 15;277(7):4874-82. doi: 10.1074/jbc.M110683200. Epub 2001 Nov 29.
5
Erythritol predicted to inhibit permeation of water and solutes through the conducting pore of P. falciparum aquaporin.
Biophys Chem. 2015 Mar;198:14-21. doi: 10.1016/j.bpc.2015.01.004. Epub 2015 Jan 14.
6
Crystal structure of the aquaglyceroporin PfAQP from the malarial parasite Plasmodium falciparum.
Nat Struct Mol Biol. 2008 Jun;15(6):619-25. doi: 10.1038/nsmb.1431. Epub 2008 May 25.
8
Glycerol modulates water permeation through Escherichia coli aquaglyceroporin GlpF.
Biochim Biophys Acta. 2013 Aug;1828(8):1786-93. doi: 10.1016/j.bbamem.2013.03.008. Epub 2013 Mar 16.
9
The inhibition of glycerol permeation through aquaglyceroporin-3 induced by mercury(II): A molecular dynamics study.
J Inorg Biochem. 2016 Jul;160:78-84. doi: 10.1016/j.jinorgbio.2015.11.027. Epub 2015 Dec 18.
10
Dihydroxyacetone and methylglyoxal as permeants of the Plasmodium aquaglyceroporin inhibit parasite proliferation.
Biochim Biophys Acta. 2006 Aug;1758(8):1012-7. doi: 10.1016/j.bbamem.2005.12.002. Epub 2006 Jan 4.

引用本文的文献

4
Erythritol predicted to inhibit permeation of water and solutes through the conducting pore of P. falciparum aquaporin.
Biophys Chem. 2015 Mar;198:14-21. doi: 10.1016/j.bpc.2015.01.004. Epub 2015 Jan 14.
5
Does Plasmodium falciparum have an Achilles' heel?
Malar Chemother Control Elimin. 2014 Apr 5;3(1). doi: 10.4172/2090-2778.1000114.
6
Glycerol modulates water permeation through Escherichia coli aquaglyceroporin GlpF.
Biochim Biophys Acta. 2013 Aug;1828(8):1786-93. doi: 10.1016/j.bbamem.2013.03.008. Epub 2013 Mar 16.

本文引用的文献

1
Glycerol modulates water permeation through Escherichia coli aquaglyceroporin GlpF.
Biochim Biophys Acta. 2013 Aug;1828(8):1786-93. doi: 10.1016/j.bbamem.2013.03.008. Epub 2013 Mar 16.
3
Exploring the free-energy landscapes of biological systems with steered molecular dynamics.
Phys Chem Chem Phys. 2011 Apr 7;13(13):6176-83. doi: 10.1039/c0cp02799e. Epub 2011 Feb 25.
4
Dynamics and energetics of solute permeation through the Plasmodium falciparum aquaglyceroporin.
Phys Chem Chem Phys. 2010 Sep 21;12(35):10246-54. doi: 10.1039/c004384m. Epub 2010 Jul 7.
5
Determination of equilibrium free energy from nonequilibrium work measurements.
Phys Chem Chem Phys. 2010 Jul 7;12(25):6579-82. doi: 10.1039/b926889h. Epub 2010 May 12.
6
CHARMM: the biomolecular simulation program.
J Comput Chem. 2009 Jul 30;30(10):1545-614. doi: 10.1002/jcc.21287.
7
Discovery of the aquaporins and development of the field.
Handb Exp Pharmacol. 2009(190):3-28. doi: 10.1007/978-3-540-79885-9_1.
8
Structure and non-essential function of glycerol kinase in Plasmodium falciparum blood stages.
Mol Microbiol. 2009 Jan;71(2):533-45. doi: 10.1111/j.1365-2958.2008.06544.x. Epub 2008 Nov 24.
9
Crystal structure of the aquaglyceroporin PfAQP from the malarial parasite Plasmodium falciparum.
Nat Struct Mol Biol. 2008 Jun;15(6):619-25. doi: 10.1038/nsmb.1431. Epub 2008 May 25.
10
Mechanism of selectivity in aquaporins and aquaglyceroporins.
Proc Natl Acad Sci U S A. 2008 Jan 29;105(4):1198-203. doi: 10.1073/pnas.0707662104. Epub 2008 Jan 17.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验