Department of Chemistry, Graduate School of Science, Kyoto University, Kyoto 606-8502, Japan.
J Chem Phys. 2012 Nov 7;137(17):174503. doi: 10.1063/1.4762840.
A semiquantal (SQ) molecular dynamics (MD) simulation method based on an extended Hamiltonian formulation has been developed using multi-dimensional thawed gaussian wave packets (WPs), and applied to an analysis of hydrogen-bond (H-bond) dynamics in liquid water. A set of Hamilton's equations of motion in an extended phase space, which includes variance-covariance matrix elements as auxiliary coordinates representing anisotropic delocalization of the WPs, is derived from the time-dependent variational principle. The present theory allows us to perform real-time and real-space SQMD simulations and analyze nuclear quantum effects on dynamics in large molecular systems in terms of anisotropic fluctuations of the WPs. Introducing the Liouville operator formalism in the extended phase space, we have also developed an explicit symplectic algorithm for the numerical integration, which can provide greater stability in the long-time SQMD simulations. The application of the present theory to H-bond dynamics in liquid water is carried out under a single-particle approximation in which the variance-covariance matrix and the corresponding canonically conjugate matrix are reduced to block-diagonal structures by neglecting the interparticle correlations. As a result, it is found that the anisotropy of the WPs is indispensable for reproducing the disordered H-bond network compared to the classical counterpart with the use of the potential model providing competing quantum effects between intra- and intermolecular zero-point fluctuations. In addition, the significant WP delocalization along the out-of-plane direction of the jumping hydrogen atom associated with the concerted breaking and forming of H-bonds has been detected in the H-bond exchange mechanism. The relevance of the dynamical WP broadening to the relaxation of H-bond number fluctuations has also been discussed. The present SQ method provides the novel framework for investigating nuclear quantum dynamics in the many-body molecular systems in which the local anisotropic fluctuations of nuclear WPs play an essential role.
一种基于扩展哈密顿公式的半量子(SQ)分子动力学(MD)模拟方法已经被开发出来,该方法使用多维解冻的高斯波包(WP),并应用于分析液态水中的氢键(H-bond)动力学。从含时变分原理中推导出一组扩展相空间中的运动哈密顿方程,其中包括方差协方差矩阵元素作为辅助坐标,代表 WP 的各向异性离域。本理论允许我们进行实时和实空间 SQMD 模拟,并根据 WP 的各向异性波动分析大分子体系中动力学的核量子效应。通过在扩展相空间中引入刘维尔算子形式,我们还开发了一种用于数值积分的显式辛算法,该算法可以在长时 SQMD 模拟中提供更大的稳定性。本理论在单粒子近似下应用于液态水中的氢键动力学,其中方差协方差矩阵及其相应的正则共轭矩阵通过忽略粒子间相关性被简化为块对角结构。结果表明,与使用提供分子内和分子间零点波动竞争量子效应的势能模型的经典对应物相比,WP 的各向异性对于再现无序氢键网络是必不可少的。此外,在氢键交换机制中,检测到与氢键协同断裂和形成相关的跳跃氢原子的面外方向上 WP 的显著离域。WP 弥散度与氢键数波动弛豫的相关性也进行了讨论。本 SQ 方法为研究多体分子体系中的核量子动力学提供了新的框架,其中核 WP 的局部各向异性波动起着重要作用。