Department of Chemical and Biomolecular Engineering, University of Notre Dame, Notre Dame, Indiana 46556, USA.
J Chem Phys. 2012 Nov 14;137(18):184504. doi: 10.1063/1.4765097.
A computational approach is developed to quantitatively study the solvation thermodynamics of amino acid analogues in ionic liquids via molecular simulation. The solvation thermodynamics of amino acid analogues in ionic liquids is important for an understanding of protein-ionic liquid interactions, shedding insight into the structure and solubility of proteins, and the activity of enzymes in ionic liquids. This information is additionally key to developing novel extraction processes. As a result of the challenge of quantitatively describing the solvation behavior of ionic liquids, a key outcome of the present study is the development of a "hydrophobicity" scale to quantitatively describe the amino acid analogues. The scale allows one to separate the results of both the hydrophobic and hydrophillic analogues, simplifying an understanding of the observed trends. Equipped with the proposed hydrophobicity scale, one needs only perform conventional solvation free energy calculations of the amino acid analogues in the ionic liquids of interest. The necessary simulation tools are available in most open-source simulation software, facilitating the adoption of this approach by the simulation community at large. We have studied the case of varying the cation alkyl-chain length of a 1-n-alkyl-3-methylimidazolium cation paired with the bis(trifluoromethylsulfonyl)imide anion. The findings suggest that a judicious selection of both the cation and anion could potentially lead to a solvent for which the amino acid analogues have an affinity far greater than that for both water and a non-polar reference solvent.
本文开发了一种计算方法,通过分子模拟定量研究氨基酸类似物在离子液体中的溶剂化热力学。氨基酸类似物在离子液体中的溶剂化热力学对于理解蛋白质-离子液体相互作用、揭示蛋白质的结构和溶解度以及离子液体中酶的活性非常重要。这些信息对于开发新型萃取工艺也至关重要。由于难以定量描述离子液体的溶剂化行为,本研究的一个重要成果是开发了一种“疏水性”尺度来定量描述氨基酸类似物。该尺度可以将疏水性和亲水性类似物的结果分开,从而简化对观察到的趋势的理解。使用所提出的疏水性尺度,只需对感兴趣的离子液体中的氨基酸类似物进行常规溶剂化自由能计算。所需的模拟工具在大多数开源模拟软件中都可用,这使得广大模拟界更容易采用这种方法。我们研究了改变 1-正烷基-3-甲基咪唑阳离子与双(三氟甲烷磺酰基)亚胺阴离子配对的阳离子烷基链长度的情况。研究结果表明,明智地选择阳离子和阴离子有可能导致一种溶剂,其中氨基酸类似物的亲和力远大于水和非极性参考溶剂。