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表征酿酒酵母中GAL调控网络的记忆

Characterizing the memory of the GAL regulatory network in Saccharomyces cerevisiae.

作者信息

Kulkarni Vishwesh V, Kareenhalli Venkatesh, Viswananthan Ganesh A, Riedel Marc

机构信息

Department of Electrical Engineering, Indian Institute of Technology, Bombay, Mumbai 400 076 India.

出版信息

Syst Synth Biol. 2011 Dec;5(3-4):97-104. doi: 10.1007/s11693-011-9086-3. Epub 2011 Sep 20.

Abstract

Genetic regulatory networks respond dynamically to perturbations in the intracellular and extracellular environments of an organism. The GAL system in the yeast Saccharomyces cerevisiae has evolved to utilize galactose as an alternative carbon and energy source, in the absence of glucose in the environment. We present a dynamic model for GAL system in Saccharomyces cerevisiae, which includes a novel mechanism for Gal3p activation upon induction with galactose. The modification enables the model to simulate the experimental observation that in absence of galactose, oversynthesis of Gal3p can also induce the GAL system. We then characterize the memory of the GAL system as the domain of attraction of the steady states.

摘要

基因调控网络会对生物体细胞内和细胞外环境的扰动做出动态响应。酿酒酵母中的半乳糖(GAL)系统已经进化到能够在环境中缺乏葡萄糖的情况下利用半乳糖作为替代碳源和能源。我们提出了一个酿酒酵母GAL系统的动态模型,其中包括一种半乳糖诱导时Gal3p激活的新机制。这种修正使该模型能够模拟在没有半乳糖时Gal3p的过度合成也能诱导GAL系统的实验观察结果。然后,我们将GAL系统的记忆特征化为稳态的吸引域。

相似文献

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Characterizing the memory of the GAL regulatory network in Saccharomyces cerevisiae.表征酿酒酵母中GAL调控网络的记忆
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Mathematical model of GAL regulon dynamics in Saccharomyces cerevisiae.酿酒酵母 GAL 调控网络动态的数学模型。
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Making cellular memories.制造细胞记忆。
Cell. 2010 Jan 8;140(1):13-8. doi: 10.1016/j.cell.2009.12.034.
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Rational design of memory in eukaryotic cells.真核细胞中记忆的合理设计。
Genes Dev. 2007 Sep 15;21(18):2271-6. doi: 10.1101/gad.1586107.
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The adaptive filter of the yeast galactose pathway.酵母半乳糖途径的适应性过滤器。
J Theor Biol. 2006 Sep 21;242(2):372-81. doi: 10.1016/j.jtbi.2006.03.005. Epub 2006 Apr 27.

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