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大肠杆菌突变体亚群中的突变积累和适应性。

Mutation accumulation and fitness in mutator subpopulations of Escherichia coli.

机构信息

School of Molecular and Microbial Biosciences, University of Sydney, Sydney, New South Wales 2006, Australia.

出版信息

Biol Lett. 2012 Dec 5;9(1):20120961. doi: 10.1098/rsbl.2012.0961. Print 2013 Feb 23.

Abstract

Bacterial populations in clinical and laboratory settings contain a significant proportion of mutants with elevated mutation rates (mutators). Mutators have a particular advantage when multiple beneficial mutations are needed for fitness, as in antibiotic resistance. Nevertheless, high mutation rates potentially lead to increasing numbers of deleterious mutations and subsequently to the decreased fitness of mutators. To test how fitness changed with mutation accumulation, genome sequencing and fitness assays of nine Escherichia coli mutY mutators were undertaken in an evolving chemostat population at three time points. Unexpectedly, the fitness in members of the mutator subpopulation became constant despite a growing number of mutations over time. To test if the accumulated mutations affected fitness, we replaced each of the known beneficial mutations with wild-type alleles in a mutator isolate. We found that the other 25 accumulated mutations were not deleterious. Our results suggest that isolates with deleterious mutations are eliminated by competition in a continuous culture, leaving mutators with mostly neutral mutations. Interestingly, the mutator-non-mutator balance in the population reversed after the fitness plateau of mutators was reached, suggesting that the mutator-non-mutator ratio in populations has more to do with competition between members of the population than the accumulation of deleterious mutations.

摘要

临床和实验室环境中的细菌种群包含大量具有较高突变率(突变体)的突变体。当需要多个有益突变才能适应时,突变体具有特殊的优势,例如抗生素耐药性。然而,高突变率可能会导致有害突变的数量增加,从而降低突变体的适应性。为了测试适应性如何随突变积累而变化,在三个时间点,对九个大肠杆菌 mutY 突变体在进化恒化器种群中的基因组测序和适应性测定进行了研究。出乎意料的是,尽管随着时间的推移突变数量不断增加,但突变体亚群成员的适应性保持不变。为了测试累积突变是否影响适应性,我们在一个突变体分离株中用野生型等位基因替换了每个已知的有益突变。我们发现其他 25 个累积突变没有有害影响。我们的结果表明,在连续培养中,具有有害突变的分离株会被竞争淘汰,留下大多数为中性突变的突变体。有趣的是,在突变体的适应性达到平台期后,种群中的突变体-非突变体平衡发生逆转,这表明种群中的突变体-非突变体比例更多地与种群成员之间的竞争有关,而不是与有害突变的积累有关。

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本文引用的文献

1
The multiplicity of divergence mechanisms in a single evolving population.
Genome Biol. 2012 Jun 8;13(6):R41. doi: 10.1186/gb-2012-13-6-r41.
2
Insertion sequence-driven evolution of Escherichia coli in chemostats.
J Mol Evol. 2011 Apr;72(4):398-412. doi: 10.1007/s00239-011-9439-2. Epub 2011 Mar 12.
5
Hypermutability and compensatory adaptation in antibiotic-resistant bacteria.
Am Nat. 2010 Sep;176(3):303-11. doi: 10.1086/655217.
6
Genome evolution and adaptation in a long-term experiment with Escherichia coli.
Nature. 2009 Oct 29;461(7268):1243-7. doi: 10.1038/nature08480. Epub 2009 Oct 18.
8
Clonal adaptive radiation in a constant environment.
Science. 2006 Jul 28;313(5786):514-7. doi: 10.1126/science.1129865. Epub 2006 Jul 6.
9
Enrichment and elimination of mutY mutators in Escherichia coli populations.
Genetics. 2002 Nov;162(3):1055-62. doi: 10.1093/genetics/162.3.1055.
10
Fitness evolution and the rise of mutator alleles in experimental Escherichia coli populations.
Genetics. 2002 Oct;162(2):557-66. doi: 10.1093/genetics/162.2.557.

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