相似文献
1
Glycosylation Network Analysis Toolbox: a MATLAB-based environment for systems glycobiology.
Bioinformatics. 2013 Feb 1;29(3):404-6. doi: 10.1093/bioinformatics/bts703. Epub 2012 Dec 10.
2
A computational framework for the automated construction of glycosylation reaction networks.
PLoS One. 2014 Jun 30;9(6):e100939. doi: 10.1371/journal.pone.0100939. eCollection 2014.
3
A systematic framework to derive N-glycan biosynthesis process and the automated construction of glycosylation networks.
BMC Bioinformatics. 2016 Jul 25;17 Suppl 7(Suppl 7):240. doi: 10.1186/s12859-016-1094-6.
4
SBMLToolbox: an SBML toolbox for MATLAB users.
Bioinformatics. 2006 May 15;22(10):1275-7. doi: 10.1093/bioinformatics/btl111. Epub 2006 Mar 30.
5
SBML export interface for the systems biology toolbox for MATLAB.
Bioinformatics. 2007 May 15;23(10):1297-8. doi: 10.1093/bioinformatics/btm105. Epub 2007 Mar 23.
6
Systems-level modeling of cellular glycosylation reaction networks: O-linked glycan formation on natural selectin ligands.
Bioinformatics. 2008 Dec 1;24(23):2740-7. doi: 10.1093/bioinformatics/btn515. Epub 2008 Oct 7.
7
Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology.
Bioinformatics. 2006 Feb 15;22(4):514-5. doi: 10.1093/bioinformatics/bti799. Epub 2005 Nov 29.
8
CRA toolbox: software package for conditional robustness analysis of cancer systems biology models in MATLAB.
BMC Bioinformatics. 2019 Jul 9;20(1):385. doi: 10.1186/s12859-019-2933-z.
9
Integration of Web-Based Tools to Visualize, Integrate, and Interpret Glycogene Expression and Glycomics Data.
Methods Mol Biol. 2024;2836:97-109. doi: 10.1007/978-1-0716-4007-4_7.
10
UniCarb-DB: a database resource for glycomic discovery.
Bioinformatics. 2011 May 1;27(9):1343-4. doi: 10.1093/bioinformatics/btr137. Epub 2011 Mar 12.
引用本文的文献
1
GlyCompute: towards the automated analysis of protein N-linked glycosylation kinetics via an open-source computational framework.
Anal Bioanal Chem. 2025 Feb;417(5):957-972. doi: 10.1007/s00216-024-05522-3. Epub 2024 Sep 26.
2
Heparan sulfate-dependent phase separation of CCL5 and its chemotactic activity.
Elife. 2024 Jul 1;13:RP93871. doi: 10.7554/eLife.93871.
3
N-Glycosylation Network Construction and Analysis to Modify Glycans on the Spike (S) Glycoprotein of SARS-CoV-2.
Front Bioinform. 2021 Jun 8;1:667012. doi: 10.3389/fbinf.2021.667012. eCollection 2021.
4
GlycoEnzOnto: a GlycoEnzyme pathway and molecular function ontology.
Bioinformatics. 2022 Dec 13;38(24):5413-5420. doi: 10.1093/bioinformatics/btac704.
5
Mendelian randomization of circulating proteome identifies actionable targets in heart failure.
BMC Genomics. 2022 Aug 13;23(1):588. doi: 10.1186/s12864-022-08811-2.
6
Global mapping of glycosylation pathways in human-derived cells.
Dev Cell. 2021 Apr 19;56(8):1195-1209.e7. doi: 10.1016/j.devcel.2021.02.023. Epub 2021 Mar 16.
7
Insights into Bioinformatic Applications for Glycosylation: Instigating an Awakening towards Applying Glycoinformatic Resources for Cancer Diagnosis and Therapy.
Int J Mol Sci. 2020 Dec 8;21(24):9336. doi: 10.3390/ijms21249336.
8
A consensus-based and readable extension of near de for eaction ules (LiCoRR).
Beilstein J Org Chem. 2020 Oct 27;16:2645-2662. doi: 10.3762/bjoc.16.215. eCollection 2020.
9
A Comprehensive, Open-source Platform for Mass Spectrometry-based Glycoproteomics Data Analysis.
Mol Cell Proteomics. 2017 Nov;16(11):2032-2047. doi: 10.1074/mcp.M117.068239. Epub 2017 Sep 8.
10
What can mathematical modelling say about CHO metabolism and protein glycosylation?
Comput Struct Biotechnol J. 2017 Jan 28;15:212-221. doi: 10.1016/j.csbj.2017.01.005. eCollection 2017.
本文引用的文献
1
The GlycomeAtlas tool for visualizing and querying glycome data.
Bioinformatics. 2012 Nov 1;28(21):2849-50. doi: 10.1093/bioinformatics/bts516. Epub 2012 Aug 24.
2
Systems glycobiology: biochemical reaction networks regulating glycan structure and function.
Glycobiology. 2011 Dec;21(12):1541-53. doi: 10.1093/glycob/cwr036. Epub 2011 Mar 24.
3
GlycomeDB--a unified database for carbohydrate structures.
Nucleic Acids Res. 2011 Jan;39(Database issue):D373-6. doi: 10.1093/nar/gkq1014. Epub 2010 Nov 2.
4
A mathematical model to derive N-glycan structures and cellular enzyme activities from mass spectrometric data.
Glycobiology. 2009 Nov;19(11):1163-75. doi: 10.1093/glycob/cwp081. Epub 2009 Jun 8.
5
Systems-level modeling of cellular glycosylation reaction networks: O-linked glycan formation on natural selectin ligands.
Bioinformatics. 2008 Dec 1;24(23):2740-7. doi: 10.1093/bioinformatics/btn515. Epub 2008 Oct 7.
6
A mathematical model of N-linked glycoform biosynthesis.
Biotechnol Bioeng. 1997 Sep 20;55(6):890-908. doi: 10.1002/(SICI)1097-0290(19970920)55:6<890::AID-BIT7>3.0.CO;2-B.
7
The GlycanBuilder: a fast, intuitive and flexible software tool for building and displaying glycan structures.
Source Code Biol Med. 2007 Aug 7;2:3. doi: 10.1186/1751-0473-2-3.
8
SBMLToolbox: an SBML toolbox for MATLAB users.
Bioinformatics. 2006 May 15;22(10):1275-7. doi: 10.1093/bioinformatics/btl111. Epub 2006 Mar 30.
9
Advancing glycomics: implementation strategies at the consortium for functional glycomics.
Glycobiology. 2006 May;16(5):82R-90R. doi: 10.1093/glycob/cwj080. Epub 2006 Feb 14.
10
The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models.
Bioinformatics. 2003 Mar 1;19(4):524-31. doi: 10.1093/bioinformatics/btg015.
Zotero 插件