Medical Scientist Training Program, Washington University in St. Louis, One Brookings Drive, Campus Box 1097, St. Louis, MO 63130, USA.
Biochem J. 2013 Jan 15;449(2):307-18. doi: 10.1042/BJ20121346.
Intrinsically disordered proteins participate in important protein-protein and protein-nucleic acid interactions and control cellular phenotypes through their prominence as dynamic organizers of transcriptional, post-transcriptional and signalling networks. These proteins challenge the tenets of the structure-function paradigm and their functional mechanisms remain a mystery given that they fail to fold autonomously into specific structures. Solving this mystery requires a first principles understanding of the quantitative relationships between information encoded in the sequences of disordered proteins and the ensemble of conformations they sample. Advances in quantifying sequence-ensemble relationships have been facilitated through a four-way synergy between bioinformatics, biophysical experiments, computer simulations and polymer physics theories. In the present review we evaluate these advances and the resultant insights that allow us to develop a concise quantitative framework for describing the sequence-ensemble relationships of intrinsically disordered proteins.
无规蛋白通过作为转录、转录后和信号网络的动态组织者参与重要的蛋白-蛋白和蛋白-核酸相互作用,并控制细胞表型。这些蛋白质挑战了结构-功能范式的原则,并且由于它们不能自主折叠成特定的结构,其功能机制仍然是一个谜。要解决这个谜团,需要从第一性原理上理解无序蛋白序列中编码的信息与它们所采样的构象总体之间的定量关系。通过生物信息学、生物物理实验、计算机模拟和聚合物物理理论之间的四向协同,促进了定量序列-总体关系的进展。在本综述中,我们评估了这些进展以及由此产生的见解,这些见解使我们能够开发一个简洁的定量框架来描述无规蛋白的序列-总体关系。