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基于配体的虚拟筛选方法鉴定 H5N1 流感 A 病毒神经氨酸酶的潜在抑制剂。

Identification of potential inhibitors of H5N1 influenza A virus neuraminidase by ligand-based virtual screening approach.

机构信息

Bioinformatics Division, School of Bio Sciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India.

出版信息

Cell Biochem Biophys. 2013 Jul;66(3):657-69. doi: 10.1007/s12013-012-9510-7.

Abstract

The neuraminidase (NA) of the influenza virus is the target of antiviral drug, oseltamivir. Recently, cases were reported that influenza virus becoming resistant to oseltamivir, necessitating the development of new long-acting antiviral compounds. In this report, a novel class of lead molecule with potential NA inhibitory activity was identified using a combination of virtual screening (VS), molecular docking, and molecular dynamic approach. The PubChem database was used to perform the VS analysis by employing oseltamivir as query. Subsequently, the data reduction was carried out by employing molecular docking study. Furthermore, the screened lead molecules were analyzed with respect to the Lipinski rule of five, drug-likeness, toxicity profiles, and other physico-chemical properties of drugs by suitable software program. Final screening was carried out by normal mode analysis and molecular dynamic simulation approach. The result indicates that CID 25145634, deuterium-enriched oseltamivir, become a promising lead compound and be effective in treating oseltamivir sensitive as well as resistant influenza virus strains.

摘要

流感病毒的神经氨酸酶(NA)是抗病毒药物奥司他韦的作用靶点。最近有报道称,流感病毒对奥司他韦产生了耐药性,因此需要开发新的长效抗病毒化合物。在本报告中,我们采用虚拟筛选(VS)、分子对接和分子动力学方法相结合的方式,鉴定出了一类具有潜在 NA 抑制活性的新型先导化合物。我们使用奥司他韦作为查询,对 PubChem 数据库进行了 VS 分析。随后,通过分子对接研究进行了数据缩减。此外,我们还通过适当的软件程序,对筛选出的先导化合物进行了关于 Lipinski 五规则、类药性、毒性概况和其他药物理化性质的分析。最后通过正常模式分析和分子动力学模拟方法进行了最终筛选。结果表明,CID 25145634(氘代奥司他韦)可能成为一种有前途的先导化合物,可有效治疗对奥司他韦敏感和耐药的流感病毒株。

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