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从 cDNA 文库中分析茶树休眠芽(Banjhi)的转录组,揭示了与休眠相关的基因。

Analysis of dormant bud (Banjhi) specific transcriptome of tea (Camellia sinensis (L.) O. Kuntze) from cDNA library revealed dormancy-related genes.

机构信息

UPASI-Tea Research Foundation, Nirar Dam B.P.O, Valparai, 642127, TamilNadu, India.

出版信息

Appl Biochem Biotechnol. 2013 Feb;169(4):1405-17. doi: 10.1007/s12010-012-0070-5. Epub 2013 Jan 12.

DOI:10.1007/s12010-012-0070-5
PMID:23315209
Abstract

Bud dormancy is of ecological and economical interest due to its impact on tea (Camellia sinensis (L.) O. Kuntze) plant growth and yield. Growth regulation associated with dormancy is an essential element in plant's life cycle that leads to changes in expression of large number of genes. In order to identify and provide a picture of the transcriptome profile, cDNA library was constructed from dormant bud (banjhi) of tea. Sequence and gene ontology analysis of 3,500 clones, in many cases, enabled their functional categorization concerning the bud growth. Based on the cDNA library data, the putative role of identified genes from tea is discussed in relation to growth and dormancy, which includes morphogenesis, cellular differentiation, tropism, cell cycle, signaling, and various metabolic pathways. There was a higher representation of unknown processes such as unknown molecular functions (65.80 %), unknown biological processes (62.46 %), and unknown cellular components (67.42 %). However, these unknown transcripts represented a novel component of transcripts in tea plant bud growth and/or dormancy development. The identified transcripts and expressed sequence tags provides a valuable public resource and preliminary insights into the molecular mechanisms of bud dormancy regulation. Further, the findings will be the target of future expression experiments, particularly for further identification of dormancy-related genes in this species.

摘要

由于休眠对茶树(Camellia sinensis (L.) O. Kuntze)生长和产量的影响,其具有生态和经济意义。与休眠相关的生长调节是植物生命周期的一个重要组成部分,导致大量基因表达的变化。为了鉴定和提供转录组图谱,我们构建了来自茶树休眠芽(banjhi)的 cDNA 文库。对 3500 个克隆的序列和基因本体分析,在许多情况下,能够对其功能进行分类,涉及芽的生长。基于 cDNA 文库数据,讨论了从茶树中鉴定出的基因在生长和休眠中的假定作用,包括形态发生、细胞分化、向性、细胞周期、信号转导和各种代谢途径。有更高比例的未知过程,如未知分子功能(65.80%)、未知生物过程(62.46%)和未知细胞成分(67.42%)。然而,这些未知转录本代表了茶树芽生长和/或休眠发育中转录本的一个新组成部分。鉴定的转录本和表达序列标签提供了一个有价值的公共资源,并初步了解了芽休眠调控的分子机制。此外,这些发现将成为未来表达实验的目标,特别是为进一步鉴定该物种中与休眠相关的基因。

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