De Zotti Marta, Biondi Barbara, Crisma Marco, Hjørringgaard Claudia U, Berg Albrecht, Brückner Hans, Toniolo Claudio
Department of Chemistry, Institute of Biomolecular Chemistry, CNR, Padova Unit, University of Padova, 35131 Padova, Italy.
Biopolymers. 2012;98(1):36-49. doi: 10.1002/bip.21679. Epub 2011 May 17.
The nonproteinogenic, C(α)-tetrasubstituted, helicogenic, chiral α-amino acid isovaline (Iva) is remarkably spread in the biosphere. Together with its achiral, lower homolog α-aminoisobutyric acid (Aib), it represents a characteristic marker of a class of naturally occurring peptide antibiotics, for which the acronym "peptaibiotics" became established. In these peptides, Iva occurs as the (S)-(= L) or the (R)-(= D) enantiomer, but peptide sequences containing both Iva enantiomers are also common. Here, we applied our recently developed (1)H-NMR method, which enables the nondestructive assignment of the configuration of each Iva residue in a peptide of known helical screw sense, to natural and synthetic peptaibiotics. Our method proved to be generally applicable and provided evidence that, in the peptaibiotic bergofungin A, the Iva(12) configuration is (R) and not (S) as reported previously. Moreover, we extended our NMR method by including a (13)C-NMR parameter. A statistical analysis of the preferred main- and side-chain conformations of the Iva residues in peptides, performed based on their published X-ray diffraction structures, allowed us to provide a sound rationale to the NMR criteria exploited to establish the configuration of this amino acid.
非蛋白质ogenic、C(α)-四取代、螺旋ogenic、手性α-氨基酸异缬氨酸(Iva)在生物圈中分布广泛。它与其非手性的低级同系物α-氨基异丁酸(Aib)一起,是一类天然存在的肽抗生素的特征性标志物,“肽抗生素”这一缩写词由此确立。在这些肽中,Iva以(S)-(= L)或(R)-(= D)对映体形式存在,但同时含有两种Iva对映体的肽序列也很常见。在此,我们将我们最近开发的(1)H-NMR方法应用于天然和合成的肽抗生素,该方法能够对已知螺旋旋向的肽中每个Iva残基的构型进行无损归属。我们的方法被证明普遍适用,并提供了证据表明,在肽抗生素bergofungin A中,Iva(12)的构型是(R),而不是先前报道的(S)。此外,我们通过纳入一个(13)C-NMR参数扩展了我们的NMR方法。基于已发表的X射线衍射结构对肽中Iva残基的优选主链和侧链构象进行统计分析,使我们能够为用于确定该氨基酸构型的NMR标准提供合理依据。