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大肠杆菌RNA聚合酶与噬菌体T2 DNA的复合物形成:DNA中的长程效应

Complex Formation of E. coli RNA Polymerase with Bacteriophage T2 DNA: Long-Range Effects in DNA.

作者信息

Kamzolova S G, Ivanova N N, Kamzalov S S

机构信息

Institute of Cell Biophysics of Russian Academy of Sciences, Pushchino, Moscow region, 142292 Russia.

出版信息

J Biol Phys. 1999 Jun;24(2-4):157-66. doi: 10.1023/A:1005135800715.

DOI:10.1023/A:1005135800715
PMID:23345676
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3456593/
Abstract

Conformation behavior of phase T2 DNA in the process of its interaction with it E. coli RNA polymerase was studied using spin labeling technique. T2 DNA was modified by the spin-labeled imidazole at OH-groups of glucosylated cytidine residues. It was shown that the binding of RNA polymerase under the conditions favoring the formation of open promoter complexes induces specific conformational changes in the spin-labeled DNA. The observed conformational changes encompass not only the promoter regions of DNA which are involved in direct contacts with RNA polymerase molecules but extend over remote DNA sites (long-range effect). In relation to this effect, current theoretical models of DNA dynamics are discussed.

摘要

利用自旋标记技术研究了T2期DNA与大肠杆菌RNA聚合酶相互作用过程中的构象行为。通过自旋标记的咪唑对糖基化胞嘧啶残基的羟基进行修饰,从而对T2 DNA进行了改性。结果表明,在有利于形成开放启动子复合物的条件下,RNA聚合酶的结合会诱导自旋标记DNA发生特定的构象变化。观察到的构象变化不仅包括与RNA聚合酶分子直接接触的DNA启动子区域,还延伸到远程DNA位点(远距离效应)。针对这种效应,讨论了当前DNA动力学的理论模型。

相似文献

1
Complex Formation of E. coli RNA Polymerase with Bacteriophage T2 DNA: Long-Range Effects in DNA.大肠杆菌RNA聚合酶与噬菌体T2 DNA的复合物形成:DNA中的长程效应
J Biol Phys. 1999 Jun;24(2-4):157-66. doi: 10.1023/A:1005135800715.
2
[Conformational analysis of complexes of RNA polymerase from Escherichia coli with DNA].[大肠杆菌RNA聚合酶与DNA复合物的构象分析]
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[Specific chemical modification of cytidine in T4 DNA by a spin label].[通过自旋标记对T4 DNA中胞苷进行特定化学修饰]
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Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates.大肠杆菌σ⁷⁰ RNA聚合酶与λP(R)启动子结合的动力学研究及结构模型:形成动力学上重要中间体时的大规模构象变化
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[T2 DNA, modified by 2,2,6,6-tetramethyl-4-bromoacetooxypiperidine-i-oxyl as a template for RNA polymerase from E. coli B].[经2,2,6,6-四甲基-4-溴乙酰氧基哌啶-1-氧基修饰的T2 DNA作为大肠杆菌B RNA聚合酶的模板]
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A direct real-time spectroscopic investigation of the mechanism of open complex formation by T7 RNA polymerase.对T7 RNA聚合酶形成开放复合物机制的直接实时光谱研究。
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DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.RNA聚合酶-启动子开放复合物形成过程中两个动力学上重要中间体的DNA足迹:与起始位点和下游DNA的相互作用诱导聚合酶和DNA顺序构象变化的证据。
J Mol Biol. 1998 Nov 6;283(4):741-56. doi: 10.1006/jmbi.1998.2129.
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Stopped-flow kinetic analysis of the interaction of Escherichia coli RNA polymerase with the bacteriophage T7 A1 promoter.大肠杆菌RNA聚合酶与噬菌体T7 A1启动子相互作用的停流动力学分析。
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Analysis of regions within the bacteriophage T4 AsiA protein involved in its binding to the sigma70 subunit of E. coli RNA polymerase and its role as a transcriptional inhibitor and co-activator.对噬菌体T4 AsiA蛋白中与大肠杆菌RNA聚合酶σ70亚基结合相关区域的分析,以及其作为转录抑制剂和共激活因子的作用。
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Late sigma factor of bacteriophage T4. Formation and properties of RNA polymerase-promoter complexes.
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