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一种新型的 3-磺基丙酰辅酶 A(3SP-CoA)脱硫酶,来自 Advenella mimigardefordensis 菌株 DPN7T,作为 3,3'-二硫代二丙酸分解代谢过程中的关键酶,属于酰基辅酶 A 脱氢酶超家族的一员。

A novel 3-sulfinopropionyl coenzyme A (3SP-CoA) desulfinase from Advenella mimigardefordensis strain DPN7T acting as a key enzyme during catabolism of 3,3'-dithiodipropionic acid is a member of the acyl-CoA dehydrogenase superfamily.

机构信息

Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Münster, Germany.

出版信息

J Bacteriol. 2013 Apr;195(7):1538-51. doi: 10.1128/JB.02105-12. Epub 2013 Jan 25.

Abstract

3-Sulfinopropionyl coenzyme A (3SP-CoA) desulfinase (AcdDPN7) is a new desulfinase that catalyzes the sulfur abstraction from 3SP-CoA in the betaproteobacterium Advenella mimigardefordensis strain DPN7(T). During investigation of a Tn5::mob-induced mutant defective in growth on 3,3'-dithiodipropionate (DTDP) and also 3-sulfinopropionate (3SP), the transposon insertion was mapped to an open reading frame with the highest homology to an acyl-CoA dehydrogenase (Acd) from Burkholderia phenoliruptrix strain BR3459a (83% identical and 91% similar amino acids). An A. mimigardefordensis Δacd mutant was generated and verified the observed phenotype of the Tn5::mob-induced mutant. For enzymatic studies, AcdDPN7 was heterologously expressed in Escherichia coli BL21(DE3)/pLysS by using pET23a::acdDPN7. The purified protein is yellow and contains a noncovalently bound flavin adenine dinucleotide (FAD) cofactor, as verified by high-performance liquid chromatography-electrospray ionization mass spectrometry (HPLC-ESI-MS) analyses. Size-exclusion chromatography revealed a native molecular mass of about 173 kDa, indicating a homotetrameric structure (theoretically 179 kDa), which is in accordance with other members of the acyl-CoA dehydrogenase superfamily. In vitro assays unequivocally demonstrated that the purified enzyme converted 3SP-CoA into propionyl-CoA and sulfite (SO3(2-)). Kinetic studies of AcdDPN7 revealed a Vmax of 4.19 μmol min(-1) mg(-1), an apparent Km of 0.013 mM, and a kcat/Km of 240.8 s(-1) mM(-1) for 3SP-CoA. However, AcdDPN7 is unable to perform a dehydrogenation, which is the usual reaction catalyzed by members of the acyl-CoA dehydrogenase superfamily. Comparison to other known desulfinases showed a comparably high catalytic efficiency of AcdDPN7 and indicated a novel reaction mechanism. Hence, AcdDPN7 encodes a new desulfinase based on an acyl-CoA dehydrogenase (EC 1.3.8.x) scaffold. Concomitantly, we identified the gene product that is responsible for the final desulfination step during catabolism of 3,3'-dithiodipropionate (DTDP), a sulfur-containing precursor substrate for biosynthesis of polythioesters.

摘要

3-磺基丙酰辅酶 A(3SP-CoA)脱硫酶(AcdDPN7)是一种新型脱硫酶,可催化β变形菌 Advenella mimigardefordensis 菌株 DPN7(T)中 3SP-CoA 的硫原子取代。在研究 Tn5::mob 诱导的突变体时,该突变体不能生长在 3,3'-二硫代二丙酸(DTDP)和 3-磺基丙酸盐(3SP)上,转座子插入到一个与 Burkholderia phenoliruptrix 菌株 BR3459a 的酰基辅酶 A 脱氢酶(Acd)同源性最高的开放阅读框中(83%相同,91%相似的氨基酸)。生成了 A. mimigardefordensis Δacd 突变体,并验证了 Tn5::mob 诱导突变体的观察到的表型。为了进行酶学研究,通过使用 pET23a::acdDPN7 在 Escherichia coli BL21(DE3)/pLysS 中异源表达 AcdDPN7。通过高效液相色谱-电喷雾电离质谱(HPLC-ESI-MS)分析证实,纯化的蛋白呈黄色,并且含有非共价结合的黄素腺嘌呤二核苷酸(FAD)辅因子。分子筛色谱法显示天然分子量约为 173 kDa,表明其为同源四聚体结构(理论上为 179 kDa),与酰基辅酶 A 脱氢酶超家族的其他成员一致。体外测定明确表明,纯化的酶将 3SP-CoA 转化为丙酰辅酶 A 和亚硫酸盐(SO3(2-))。AcdDPN7 的动力学研究表明,3SP-CoA 的 Vmax 为 4.19 μmol min(-1) mg(-1),表观 Km 为 0.013 mM,kcat/Km 为 240.8 s(-1) mM(-1)。然而,AcdDPN7 不能进行脱氢反应,这是酰基辅酶 A 脱氢酶超家族成员通常催化的反应。与其他已知的脱硫酶相比,AcdDPN7 的催化效率相当高,并表明了一种新的反应机制。因此,AcdDPN7 基于酰基辅酶 A 脱氢酶(EC 1.3.8.x)支架编码了一种新的脱硫酶。同时,我们鉴定了负责 3,3'-二硫代二丙酸(DTDP)代谢过程中最终脱硫步骤的基因产物,DTDP 是合成聚硫酯的含硫前体底物。

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