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乳酸细菌代谢模型中的糖酵解振荡。

Glycolytic oscillations in a model of a lactic acid bacterium metabolism.

机构信息

Department of Modeling of Biological Processes, COS Heidelberg/BioQuant, University Heidelberg, 69120 Heidelberg, Germany.

出版信息

Biophys Chem. 2013 Feb;172:53-60. doi: 10.1016/j.bpc.2012.11.002. Epub 2012 Dec 12.

Abstract

Glycolytic oscillations in yeast have been extensively studied. It is still unclear, if these oscillations are caused by the allosteric enzyme phosphofructokinase or the stoichiometry of glycolysis which contains an autocatalysis with respect to ATP. Bacterial glycolysis shows a different stoichiometry, however, also containing a stoichiometric autocatalysis. For Escherichia coli, the regulation of the enzyme phosphofructokinase is also assumed to be a major reason for oscillations to occur. We investigated glycolytic oscillations in a quantitative kinetic model for Streptococcus pyogenes set-up on the basis of experimental data. We found oscillations within physiologically feasible parameter ranges. We investigated the origin of these oscillations and conclude that, again, both the stoichiometry of the system, as well as its allosterically regulated enzymes can give rise to these oscillations. For the analysis we employed established and new optimization methods for finding oscillatory regimes and present these in the context of this study.

摘要

酵母中的糖酵解振荡已经得到了广泛的研究。目前仍不清楚这些振荡是由变构酶磷酸果糖激酶引起的,还是由包含针对 ATP 的自动催化的糖酵解的化学计量引起的。然而,细菌糖酵解具有不同的化学计量,也包含化学计量的自动催化。对于大肠杆菌,酶磷酸果糖激酶的调节也被认为是发生振荡的主要原因。我们基于实验数据,在建立的定量动力学模型中研究了酿脓链球菌的糖酵解振荡。我们在生理上可行的参数范围内发现了振荡。我们研究了这些振荡的起源,并得出结论,同样,系统的化学计量及其变构调节的酶都可以引起这些振荡。对于分析,我们采用了已建立的和新的优化方法来寻找振荡状态,并在本研究的背景下进行了介绍。

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