人类内源性逆转录病毒-H 插入筛查。

Human endogenous retrovirus-H insertion screening.

机构信息

Department of Molecular Biology and Genetics, Faculty of Science, Istanbul University, Vezneciler, Istanbul 34134, Turkey.

出版信息

Mol Med Rep. 2013 Apr;7(4):1305-9. doi: 10.3892/mmr.2013.1295. Epub 2013 Jan 28.

Abstract

Endogenous retroviruses (ERVs) and ERV-like sequences comprise 8% of the human genome. We aimed to analyze genome integration polymorphisms of human endogenous retrovirus (HERV)-H by the inter-retrotransposon amplified polymorphism (IRAP) technique using the sequences of LTR7A (450 bp), LTR7B (445 bp) and LTR7C (471 bp). Blood samples from 20 individuals (10 females and 10 males) of diverse ethnic origins were used for the determination of integration variations at the genomic level. Isolated genomic DNA was screened using 3 pairs of primers corresponding to LTR regions of the HERV-H gene. We observed insertion polymorphism patterns between 0-87% in all subjects. The findings obtained contribute to our understanding of the effects of HERV-H on variations within the human genome.

摘要

内源性逆转录病毒(ERVs)和ERV 样序列占人类基因组的 8%。我们旨在通过使用 LTR7A(450bp)、LTR7B(445bp)和 LTR7C(471bp)的序列,利用逆转座子扩增多态性(IRAP)技术分析人类内源性逆转录病毒(HERV)-H 的基因组整合多态性。来自不同种族背景的 20 个人(10 名女性和 10 名男性)的血液样本用于确定基因组水平的整合变异。使用 3 对对应于 HERV-H 基因 LTR 区域的引物筛选分离的基因组 DNA。我们观察到所有受试者的插入多态性模式在 0-87%之间。所获得的发现有助于我们理解 HERV-H 对人类基因组内变异的影响。

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