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人参土杆菌(Chryseobacterium ginsengisoli),从人参根际土壤中分离得到,对鞘氨醇单胞菌属(Chryseobacterium)描述的修订。

Chryseobacterium ginsengisoli sp. nov., isolated from the rhizosphere of ginseng and emended description of Chryseobacterium gleum.

机构信息

Korean Ginseng Center and Ginseng Genetic Resource Bank, Kyung Hee University, 1 Seocheon-dong, Giheung-gu, Yongin-si, Gyeonggi-do 449-701, South Korea.

出版信息

Int J Syst Evol Microbiol. 2013 Aug;63(Pt 8):2975-2980. doi: 10.1099/ijs.0.045427-0. Epub 2013 Feb 1.

Abstract

Strain DCY 63(T), isolated from the rhizosphere of ginseng, was a Gram-reaction-negative, strictly aerobic, non-motile, catalase- and oxidase-positive rod. 16S rRNA gene sequence analysis revealed that strain DCY 63(T) belonged to the genus Chryseobacterium and was closely related to Chryseobacterium indoltheticum LMG 4025(T) (98.1 %), Chryseobacterium ginsenosidimutans THG 15(T) (98.0 %) and Chryseobacterium scophthalmum LMG 13028(T) (97.1 %). The major polar lipids of strain DCY 63(T) were phosphatidylethanolamine (PE), four unidentified aminolipids and three unidentified polar lipids, and the major fatty acids were iso-C15 : 0, iso-C17 : 0 3-OH, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and summed feature 9 (iso-C17 : 1ω9c and/or C16 : 0 10-methyl). The predominant isoprenoid quinone of strain DCY 63(T) was MK-6 and the G+C content of the genomic DNA was 31.6 mol%. The DNA-DNA relatedness values between strain DCY 63(T) and C. indoltheticum LMG 4025(T), C. ginsenosidimutans THG 15(T) and C. scophthalmum LMG 13028(T) were less than 30 %. On the basis of these data, strain DCY 63(T) is considered to represent a novel species of the genus Chryseobacterium, for which the name Chryseobacterium ginsengisoli sp. nov. is proposed. The type strain is DCY 63(T) (= KCTC 23760(T) = JCM 18019(T)). An emended description of Chryseobacterium gleum is also proposed.

摘要

从人参根际分离到的菌株 DCY 63(T)是革兰氏阴性、严格需氧、不运动、接触酶和氧化酶阳性的杆菌。16S rRNA 基因序列分析表明,菌株 DCY 63(T)属于黄杆菌属,与 Chryseobacterium indoltheticum LMG 4025(T)(98.1%)、Chryseobacterium ginsenosidimutans THG 15(T)(98.0%)和 Chryseobacterium scophthalmum LMG 13028(T)(97.1%)最为密切相关。菌株 DCY 63(T)的主要极性脂为磷脂酰乙醇胺(PE)、四种未鉴定的胺脂和三种未鉴定的极性脂,主要脂肪酸为 iso-C15:0、iso-C17:0 3-OH、特征性脂肪酸 3(C16:1ω7c 和/或 C16:1ω6c)和特征性脂肪酸 9(iso-C17:1ω9c 和/或 C16:0 10-甲基)。菌株 DCY 63(T)的主要异戊烯醌为 MK-6,基因组 DNA 的 G+C 含量为 31.6mol%。菌株 DCY 63(T)与 Chryseobacterium indoltheticum LMG 4025(T)、Chryseobacterium ginsenosidimutans THG 15(T)和 Chryseobacterium scophthalmum LMG 13028(T)的 DNA-DNA 同源性值均小于 30%。基于这些数据,菌株 DCY 63(T)被认为代表黄杆菌属的一个新种,命名为人参黄杆菌(Chryseobacterium ginsengisoli sp. nov.)。其模式菌株为 DCY 63(T)=KCTC 23760(T)=JCM 18019(T)。同时,对 Gleum 黄杆菌的描述也进行了修正。

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