Institute of Biophysics, Biological Research Centre of the Hungarian Academy of Sciences, Temesvári krt. 62, P.O. Box 521, H-6701 Szeged, Hungary.
J Photochem Photobiol B. 2013 Mar 5;120:111-9. doi: 10.1016/j.jphotobiol.2012.12.014. Epub 2013 Jan 8.
The photocycle of photoactive yellow protein was studied by kinetic absorption spectroscopy from below 100ns to seconds, at moderately alkaline pH, in the presence of high concentrations of various salts. Chemometric analysis combined with multiexponential fit of the flash-induced difference spectra provided evidence for five intermediates, including a spectrally silent form before the final recovery of the parent state, but only three with significantly distinct spectra. The calculated intermediate spectra constituted the input for the following spectrotemporal model fit using a sufficiently complex photocycle scheme with reversible transitions. This yielded the rate coefficients of the molecular transitions, the final spectra and the kinetics of the intermediates. Except for the transition between the two red shifted (early) intermediates (pR1 and pR2) and the final photocycle step, all reactions appeared to be reversible. Kosmotropic and chaotropic cosolutes had a systematic effect on the molecular rate coefficients. The largest effect, associated presumably with the exposure of the hydrophobic interior of the protein, accompanies the transition between the second red-shifted and the first blue-shifted intermediate (pR2 and pB1, respectively), i.e. it coincides with the chromophore protonation. The dependence of the rate coefficients on the Hofmeister cosolutes suggests that the conformational change of photoactive yellow protein leading eventually to the most unfolded signaling state takes place in several steps, and starts already with the relaxation after the chromophore isomerization in the microsecond time domain.
在中等碱性 pH 值条件下,研究了光激活黄色蛋白的光循环,使用动力学吸收光谱法,从低于 100ns 到秒的时间范围内,在高浓度的各种盐存在下进行。化学计量分析结合闪光诱导的差光谱的多指数拟合,为 5 个中间体提供了证据,包括最终恢复原始状态之前的光谱无声形式,但只有 3 个具有明显不同的光谱。计算出的中间光谱构成了使用具有可逆跃迁的足够复杂光循环方案的以下光谱时变模型拟合的输入。这得到了分子跃迁、最终光谱和中间体动力学的速率系数。除了两个红移(早期)中间体(pR1 和 pR2)之间的跃迁和最终光循环步骤之外,所有反应似乎都是可逆的。亲溶和疏溶共溶质对分子速率系数有系统的影响。最大的影响,可能与蛋白质疏水内部的暴露有关,伴随着第二个红移和第一个蓝移中间体(分别为 pR2 和 pB1)之间的跃迁,即它与发色团质子化同时发生。速率系数对霍夫迈斯特共溶质的依赖性表明,最终导致最展开信号状态的光激活黄色蛋白的构象变化分几个步骤进行,并且已经在微秒时间域内发色团异构化后的松弛阶段开始。