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本文引用的文献

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Fast gapped-read alignment with Bowtie 2.快速缺口读对准与 Bowtie 2。
Nat Methods. 2012 Mar 4;9(4):357-9. doi: 10.1038/nmeth.1923.
2
Weissella sp. outbreaks in commercial rainbow trout (Oncorhynchus mykiss) farms in Brazil.巴西商业虹鳟（Oncorhynchus mykiss）养殖场的魏斯氏菌属（Weissella sp.）爆发。
Vet Microbiol. 2012 May 4;156(3-4):359-66. doi: 10.1016/j.vetmic.2011.11.008. Epub 2011 Nov 17.
3
Weissella ceti sp. nov., isolated from beaked whales (Mesoplodon bidens).鲸须长尾须鲸新种，从喙鲸属（Mesoplodon bidens）中分离得到。
Int J Syst Evol Microbiol. 2011 Nov;61(Pt 11):2758-2762. doi: 10.1099/ijs.0.028522-0. Epub 2011 Jan 7.
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Bacteraemia caused by Weissella confusa at a university hospital in Taiwan, 1997-2007.1997-2007 年台湾一家大学医院由魏斯氏菌引起的菌血症。
Clin Microbiol Infect. 2011 Aug;17(8):1226-31. doi: 10.1111/j.1469-0691.2010.03388.x. Epub 2010 Dec 6.
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The Sequence Alignment/Map format and SAMtools.序列比对/映射格式和 SAMtools。
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First description of a novel Weissella species as an opportunistic pathogen for rainbow trout Oncorhynchus mykiss (Walbaum) in China.首次报道在中国将一种新型魏斯氏菌属物种作为虹鳟（Oncorhynchus mykiss (Walbaum)）的机会致病菌。
Vet Microbiol. 2009 May 12;136(3-4):314-20. doi: 10.1016/j.vetmic.2008.11.027. Epub 2008 Dec 24.
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ABySS: a parallel assembler for short read sequence data.ABySS：一种用于短读长序列数据的并行汇编器。
Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.
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Weissella confusa infection in primate (Cercopithecus mona).混淆魏斯氏菌在灵长类动物（戴安娜须猴）中的感染
Emerg Infect Dis. 2003 Oct;9(10):1307-9. doi: 10.3201/eid0910.020667.
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Fatal case of endocarditis due to Weissella confusa.一例由迷惑魏斯氏菌引起的心内膜炎致死病例。
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Taxonomic study of Weissella confusa and description of Weissella cibaria sp. nov., detected in food and clinical samples.在食品和临床样本中检测到的混淆魏斯氏菌的分类学研究及新种食源魏斯氏菌的描述。
Int J Syst Evol Microbiol. 2002 Jan;52(Pt 1):141-148. doi: 10.1099/00207713-52-1-141.

美国养殖虹鳟鱼新出现的病原体——嗜鲸魏斯氏菌NC36的基因组序列

Genome Sequence of Weissella ceti NC36, an Emerging Pathogen of Farmed Rainbow Trout in the United States.

作者信息

Ladner Jason T, Welch Timothy J, Whitehouse Chris A, Palacios Gustavo F

机构信息

Center for Genomic Sciences, U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, Maryland, USA.

出版信息

Genome Announc. 2013 Jan;1(1). doi: 10.1128/genomeA.00187-12. Epub 2013 Feb 14.

DOI:10.1128/genomeA.00187-12
PMID:23409274
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3569357/
Abstract

Novel Weissella sp. bacteria have recently been reported to be associated with disease outbreaks in cultured rainbow trout (Oncorhynchus mykiss) at commercial farms in China, Brazil, and the United States. Here we present the first genome sequence of this novel Weissella species, isolated from the southeastern United States.

摘要

最近有报道称，新型魏斯氏菌属细菌与中国、巴西和美国商业养殖场养殖的虹鳟（Oncorhynchus mykiss）疾病暴发有关。在此，我们展示了从美国东南部分离出的这种新型魏斯氏菌的首个基因组序列。