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非同源末端连接途径与心肌梗死发生相关:全基因组关联研究数据的基因集分析。

Non-homologous end-joining pathway associated with occurrence of myocardial infarction: gene set analysis of genome-wide association study data.

机构信息

Department of Cardiology, Leiden University Medical Center, Leiden, The Netherlands.

出版信息

PLoS One. 2013;8(2):e56262. doi: 10.1371/journal.pone.0056262. Epub 2013 Feb 15.

Abstract

PURPOSE

DNA repair deficiencies have been postulated to play a role in the development and progression of cardiovascular disease (CVD). The hypothesis is that DNA damage accumulating with age may induce cell death, which promotes formation of unstable plaques. Defects in DNA repair mechanisms may therefore increase the risk of CVD events. We examined whether the joints effect of common genetic variants in 5 DNA repair pathways may influence the risk of CVD events.

METHODS

The PLINK set-based test was used to examine the association to myocardial infarction (MI) of the DNA repair pathway in GWAS data of 866 subjects of the GENetic DEterminants of Restenosis (GENDER) study and 5,244 subjects of the PROspective Study of Pravastatin in the Elderly at Risk (PROSPER) study. We included the main DNA repair pathways (base excision repair, nucleotide excision repair, mismatch repair, homologous recombination and non-homologous end-joining (NHEJ)) in the analysis.

RESULTS

The NHEJ pathway was associated with the occurrence of MI in both GENDER (P = 0.0083) and PROSPER (P = 0.014). This association was mainly driven by genetic variation in the MRE11A gene (PGENDER = 0.0001 and PPROSPER = 0.002). The homologous recombination pathway was associated with MI in GENDER only (P = 0.011), for the other pathways no associations were observed.

CONCLUSION

This is the first study analyzing the joint effect of common genetic variation in DNA repair pathways and the risk of CVD events, demonstrating an association between the NHEJ pathway and MI in 2 different cohorts.

摘要

目的

DNA 修复缺陷被认为在心血管疾病 (CVD) 的发生和发展中起作用。该假说认为,随着年龄的增长而积累的 DNA 损伤可能诱导细胞死亡,从而促进不稳定斑块的形成。因此,DNA 修复机制缺陷可能会增加 CVD 事件的风险。我们研究了 5 种 DNA 修复途径中常见遗传变异的联合效应对 CVD 事件风险的影响。

方法

PLINK 基于集合的检验用于在 GENetic DEterminants of Restenosis(GENDER)研究的 866 名受试者和 PROspective Study of Pravastatin in the Elderly at Risk(PROSPER)研究的 5244 名受试者的 GWAS 数据中检测 DNA 修复途径与心肌梗死 (MI) 的关联。我们将主要的 DNA 修复途径(碱基切除修复、核苷酸切除修复、错配修复、同源重组和非同源末端连接(NHEJ))纳入分析。

结果

NHEJ 途径在 GENDER(P=0.0083)和 PROSPER(P=0.014)中均与 MI 的发生相关。这种关联主要是由 MRE11A 基因的遗传变异驱动的(PGENDER=0.0001 和 PPROSPER=0.002)。同源重组途径仅在 GENDER 中与 MI 相关(P=0.011),而对于其他途径则没有观察到关联。

结论

这是第一项分析 DNA 修复途径中常见遗传变异的联合效应对 CVD 事件风险的研究,证明了 NHEJ 途径与 2 个不同队列中的 MI 之间存在关联。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/60fd/3574159/ae7334256ed3/pone.0056262.g001.jpg

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