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远端相互作用对氧与血红素结合的影响。

Effect of distal interactions on O2 binding to heme.

机构信息

DTU Chemistry, Technical University of Denmark, DK-2800 Kongens Lyngby, Denmark.

出版信息

J Phys Chem B. 2013 Apr 11;117(14):3755-70. doi: 10.1021/jp400260u. Epub 2013 Apr 1.

Abstract

This paper reports DFT-computed electronic ground states, Mössbauer isomer shifts, O-O and Fe-O vibration frequencies, and thermodynamics of O2 binding of heme models representing different distal (position E7) interactions, strictly validated against experimental data. Based on the results, the impact of specific types of distal interactions on oxyheme electronic structure can be systematized. Hydrogen bonding increases back-donation, O-O bond activation, and oxygen binding affinity. The heme side chains reduce isomer shifts by -0.06 mm/s due to electron withdrawal from iron, and distal hydrogen bonds can further reduce isomer shifts up to 0.07 mm/s. The O-O stretch vibration, the O-O distance, and the isomer shift possess substantial heuristic value in interpreting electronic structure, whereas other properties are less effective, based on computed correlation coefficients. Shorter Fe-O bond length does not correlate with O2 affinity, as hydrogen bonding elongates both Fe-O and O-O bonds by ~0.01-0.02 Å, contrary to the situation absent from distal hydrogen bonds and of potential relevance to ligand activation where distal interactions are involved. An ionic (Weiss-type) model of Fe-O bonding combined with electron withdrawal by hydrogen bonds is shown to robustly explain the structural, spectroscopic, and thermodynamic properties of the hemes. The identified correlations may be useful, e.g., for designing O2-activating catalysts or for diagnosing heme protein variants.

摘要

本文报告了代表不同远端(E7 位)相互作用的血红素模型的 DFT 计算电子基态、穆斯堡尔同质异能移、O-O 和 Fe-O 振动频率以及 O2 结合热力学,这些结果均经过严格的实验数据验证。基于这些结果,可以系统地研究特定类型的远端相互作用对氧合血红素电子结构的影响。氢键增加了反馈、O-O 键的活化和氧的结合亲和力。由于铁上的电子被抽出,血红素侧链使同质异能移降低了 0.06mm/s,而远端氢键可以进一步使同质异能移降低高达 0.07mm/s。O-O 伸缩振动、O-O 距离和同质异能移在解释电子结构方面具有很大的启发价值,而其他性质的效果则较差,这是基于计算出的相关系数得出的。较短的 Fe-O 键长与 O2 亲和力无关,因为氢键使 Fe-O 和 O-O 键均延长约 0.01-0.02Å,与不存在远端氢键的情况相反,这可能与涉及远端相互作用的配体活化有关。Fe-O 键的离子(Weiss 型)模型与氢键引起的电子抽取相结合,被证明可以稳健地解释血红素的结构、光谱和热力学性质。所确定的相关性可能具有实用性,例如用于设计 O2 激活催化剂或用于诊断血红素蛋白变体。

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