Quantum Chemistry Group, Department of Chemistry & Centre of Advanced Studies in Chemistry, Panjab University, Chandigarh 160 014, India.
J Mol Graph Model. 2013 May;42:7-16. doi: 10.1016/j.jmgm.2013.02.005. Epub 2013 Feb 20.
For developing quantitative structure-activity relationships (QSARs), quantum-mechanical molecular descriptors based on the state-of-the-art quantum-mechanical methods such as Hartree-Fock (HF) method and density-functional theory (DFT), are now routinely employed. The validity of these quantum-mechanical methods, however, rests on the accurate estimation of electron-correlation energy. This work analyses the role of electron-correlation, using correlation energy as a molecular descriptor, in the QSARs. In particular, QSAR models, for the mutagenic activity of a set of nitrated polycyclic aromatic hydrocarbons (nitro-PAHs), are examined for the role of electron-correlation through state-of-the-art external validation parameters such as concordance correlation coefficient and recently proposed predictive squared correlation coefficients, namely, QF1(2), QF2(2), and QF3(2) etc. The electron-correlation contribution to the highest occupied and lowest unoccupied molecular orbital (HOMO/LUMO) energies is also analyzed. QSAR models based on the semi-empirical quantum-mechanical methods like PM6 and RM1 are also compared. It is found that the models, developed using electron-correlation contribution of the quantum-mechanical descriptors, are not only robust but also relatively more predictive than those developed with the HF and DFT descriptors. The latter are found to be even less reliable than PM6 and RM1 descriptors based models, which show comparable robustness and predictivity with those developed using electron correlation based descriptors. The external predictivity of model based on semi-empirical descriptors can be improved if electron-correlation contribution of the quantum-mechanical descriptors is explicitly included in the model. This work reports the first-ever use of electron-correlation energy and its contribution to the HOMO/LUMO energies as molecular descriptors.
为了开发定量构效关系(QSAR),现在通常采用基于最先进量子力学方法(如 Hartree-Fock(HF)方法和密度泛函理论(DFT))的量子力学分子描述符。然而,这些量子力学方法的有效性取决于电子相关能的准确估计。这项工作分析了电子相关的作用,将相关能用作分子描述符,用于 QSAR。特别是,通过最先进的外部验证参数,如一致性相关系数和最近提出的预测平方相关系数,即 QF1(2)、QF2(2)和 QF3(2)等,检查了一组硝化多环芳烃(硝基-PAHs)的致突变活性的 QSAR 模型中电子相关的作用。还分析了电子相关对最高占据和最低未占据分子轨道(HOMO/LUMO)能量的贡献。还比较了基于半经验量子力学方法(如 PM6 和 RM1)的 QSAR 模型。结果发现,基于量子力学描述符的电子相关贡献开发的模型不仅稳健,而且相对更具预测性,而基于 HF 和 DFT 描述符开发的模型则不那么可靠。后一种模型甚至不如基于 PM6 和 RM1 描述符的模型可靠,后者与基于电子相关描述符开发的模型具有相当的稳健性和预测性。如果明确将量子力学描述符的电子相关贡献纳入模型中,则可以提高基于半经验描述符的模型的外部预测性。这项工作首次报告了将电子相关能及其对 HOMO/LUMO 能量的贡献用作分子描述符。