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嗜热栖热放线菌乙酰木聚糖酯酶Axe2的结晶及初步晶体学分析

Crystallization and preliminary crystallographic analysis of Axe2, an acetylxylan esterase from Geobacillus stearothermophilus.

作者信息

Lansky Shifra, Alalouf Onit, Solomon Vered, Alhassid Anat, Govada Lata, Chayen Naomi E, Belrhali Hassan, Shoham Yuval, Shoham Gil

机构信息

Institute of Chemistry and the Laboratory for Structural Chemistry and Biology, Hebrew University of Jerusalem, Jerusalem 91904, Israel.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Apr 1;69(Pt 4):430-4. doi: 10.1107/S1744309113004260. Epub 2013 Mar 28.

Abstract

Acetylxylan esterases are part of the hemi-cellulolytic system of many microorganisms which utilize plant biomass for growth. Xylans, which are polymeric sugars that constitute a significant part of the plant biomass, are usually substituted with acetyl side groups attached at position 2 or 3 of the xylose backbone units. Acetylxylan esterases hydrolyse the ester linkages of the xylan acetyl groups and thus improve the ability of main-chain hydrolysing enzymes to break down the sugar backbone units. As such, these enzymes play an important part in the hemi-cellulolytic utilization system of many microorganisms that use plant biomass for growth. Interest in the biochemical characterization and structural analysis of these enzymes stems from their numerous potential biotechnological applications. An acetylxylan esterase (Axe2) of this type from Geobacillus stearothermophilus T-6 has recently been cloned, overexpressed, purified, biochemically characterized and crystallized. One of the crystal forms obtained (RB1) belonged to the tetragonal space group I422, with unit-cell parameters a = b = 110.2, c = 213.1 Å. A full diffraction data set was collected to 1.85 Å resolution from flash-cooled crystals of the wild-type enzyme at 100 K using synchrotron radiation. A selenomethionine derivative of Axe2 has also been prepared and crystallized for single-wavelength anomalous diffraction experiments. The crystals of the selenomethionine-derivatized Axe2 appeared to be isomorphous to those of the wild-type enzyme and enabled the measurement of a full 1.85 Å resolution diffraction data set at the selenium absorption edge and a full 1.70 Å resolution data set at a remote wavelength. These data are currently being used for three-dimensional structure determination of the Axe2 protein.

摘要

乙酰木聚糖酯酶是许多利用植物生物质进行生长的微生物半纤维素分解系统的一部分。木聚糖是构成植物生物质重要部分的聚合糖,通常在木糖主链单元的2位或3位连接有乙酰侧链基团。乙酰木聚糖酯酶水解木聚糖乙酰基团的酯键,从而提高主链水解酶分解糖主链单元的能力。因此,这些酶在许多利用植物生物质进行生长的微生物的半纤维素分解利用系统中发挥着重要作用。对这些酶的生化特性和结构分析的兴趣源于它们众多潜在的生物技术应用。嗜热栖热放线菌T-6的一种此类乙酰木聚糖酯酶(Axe2)最近已被克隆、过量表达、纯化、进行生化特性鉴定并结晶。获得的一种晶体形式(RB1)属于四方晶系空间群I422,晶胞参数a = b = 110.2,c = 213.1 Å。使用同步辐射从100 K下野生型酶的快速冷却晶体收集了完整的衍射数据集,分辨率达到1.85 Å。还制备了Axe2的硒代甲硫氨酸衍生物并进行结晶,用于单波长反常衍射实验。硒代甲硫氨酸衍生化的Axe2晶体似乎与野生型酶的晶体同晶型,并能够在硒吸收边缘测量完整的1.85 Å分辨率衍射数据集,以及在远离吸收边的波长下测量完整的1.70 Å分辨率数据集。这些数据目前正用于Axe2蛋白的三维结构测定。

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