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本文引用的文献

1
Processing of X-ray diffraction data collected in oscillation mode.振荡模式下收集的X射线衍射数据的处理。
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
2
Purification, crystallization and preliminary crystallographic analysis of Gan1D, a GH1 6-phospho-β-galactosidase from Geobacillus stearothermophilus T1.嗜热栖热放线菌T1来源的GH1 6-磷酸-β-半乳糖苷酶Gan1D的纯化、结晶及初步晶体学分析
Acta Crystallogr F Struct Biol Commun. 2014 Feb;70(Pt 2):225-31. doi: 10.1107/S2053230X13034778. Epub 2014 Jan 21.
3
A unique octameric structure of Axe2, an intracellular acetyl-xylooligosaccharide esterase from Geobacillus stearothermophilus.嗜热栖热放线菌胞内乙酰木寡糖酯酶Axe2的独特八聚体结构。
Acta Crystallogr D Biol Crystallogr. 2014 Feb;70(Pt 2):261-78. doi: 10.1107/S139900471302840X. Epub 2014 Jan 17.
4
Crystallization and preliminary crystallographic analysis of GanB, a GH42 intracellular β-galactosidase from Geobacillus stearothermophilus.嗜热栖热放线菌GH42胞内β-半乳糖苷酶GanB的结晶及初步晶体学分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Oct;69(Pt 10):1114-9. doi: 10.1107/S1744309113023609. Epub 2013 Sep 28.
5
Crystallization and preliminary crystallographic analysis of Abp, a GH27 β-L-arabinopyranosidase from Geobacillus stearothermophilus.嗜热栖热放线菌来源的GH27 β-L-阿拉伯吡喃糖苷酶Abp的结晶及初步晶体学分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):695-9. doi: 10.1107/S1744309113013705. Epub 2013 May 29.
6
Crystallization and preliminary crystallographic analysis of Axe2, an acetylxylan esterase from Geobacillus stearothermophilus.嗜热栖热放线菌乙酰木聚糖酯酶Axe2的结晶及初步晶体学分析
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Apr 1;69(Pt 4):430-4. doi: 10.1107/S1744309113004260. Epub 2013 Mar 28.
7
Functional characterization of the galactan utilization system of Geobacillus stearothermophilus.嗜热脂肪地芽孢杆菌半乳糖利用系统的功能特征。
FEBS J. 2013 Feb;280(3):950-64. doi: 10.1111/febs.12089. Epub 2013 Jan 7.
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The Pfam protein families database.Pfam 蛋白质家族数据库。
Nucleic Acids Res. 2012 Jan;40(Database issue):D290-301. doi: 10.1093/nar/gkr1065. Epub 2011 Nov 29.
9
A new family of carbohydrate esterases is represented by a GDSL hydrolase/acetylxylan esterase from Geobacillus stearothermophilus.一种新的碳水化合物酯酶家族由嗜热脂肪地芽孢杆菌的 GDSL 水解酶/乙酰木聚糖酯酶代表。
J Biol Chem. 2011 Dec 9;286(49):41993-42001. doi: 10.1074/jbc.M111.301051. Epub 2011 Oct 12.
10
The L-Arabinan utilization system of Geobacillus stearothermophilus.嗜热脂肪地芽孢杆菌的 L-阿拉伯聚糖利用系统。
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乙酰木寡糖酯酶Axe2二聚体形式的双突变体的初步晶体学分析。

Preliminary crystallographic analysis of a double mutant of the acetyl xylo-oligosaccharide esterase Axe2 in its dimeric form.

作者信息

Lansky Shifra, Alalouf Onit, Salama Rachel, Dvir Hay, Shoham Yuval, Shoham Gil

机构信息

Institute of Chemistry and the Laboratory for Structural Chemistry and Biology, The Hebrew University of Jerusalem, Jerusalem 91904, Israel.

Department of Biotechnology and Food Engineering, Technion - Israel Institute of Technology, Haifa 32000, Israel.

出版信息

Acta Crystallogr F Struct Biol Commun. 2014 Apr;70(Pt 4):476-81. doi: 10.1107/S2053230X14004129. Epub 2014 Mar 25.

DOI:10.1107/S2053230X14004129
PMID:24699743
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3976067/
Abstract

Xylans are polymeric sugars constituting a significant part of the plant cell wall. They are usually substituted with acetyl side groups attached at positions 2 or 3 of the xylose backbone units. Acetylxylan esterases are part of the hemicellulolytic system of many microorganisms which utilize plant biomass for growth. These enzymes hydrolyze the ester linkages of the xylan acetyl groups and thus improve the accessibility of main-chain-hydrolyzing enzymes and their ability to break down the sugar backbone units. The acetylxylan esterases are therefore critically important for those microorganisms and as such could be used for a wide range of biotechnological applications. The structure of an acetylxylan esterase (Axe2) isolated from the thermophilic bacterium Geobacillus stearothermophilus T6 has been determined, and it has been demonstrated that the wild-type enzyme is present as a unique torus-shaped octamer in the crystal and in solution. In order to understand the functional origin of this unique oligomeric structure, a series of rational noncatalytic, site-specific mutations have been made on Axe2. Some of these mutations led to a different dimeric form of the protein, which showed a significant reduction in catalytic activity. One of these double mutants, Axe2-Y184F-W190P, has recently been overexpressed, purified and crystallized. The best crystals obtained belonged to the orthorhombic space group P212121, with unit-cell parameters a = 71.1, b = 106.0, c = 378.6 Å. A full diffraction data set to 2.3 Å resolution has been collected from a flash-cooled crystal of this type at 100 K using synchrotron radiation. This data set is currently being used for the three-dimensional structure analysis of the Axe2-Y184F-W190P mutant in its dimeric form.

摘要

木聚糖是构成植物细胞壁重要部分的聚合糖。它们通常在木糖主链单元的2位或3位连接有乙酰基侧链。乙酰木聚糖酯酶是许多利用植物生物质生长的微生物半纤维素分解系统的一部分。这些酶水解木聚糖乙酰基团的酯键,从而提高主链水解酶的可及性及其分解糖主链单元的能力。因此,乙酰木聚糖酯酶对这些微生物至关重要,可用于广泛的生物技术应用。已确定了从嗜热脂肪芽孢杆菌T6分离出的一种乙酰木聚糖酯酶(Axe2)的结构,并且已证明野生型酶在晶体和溶液中以独特的环形八聚体形式存在。为了理解这种独特寡聚结构的功能起源,已对Axe2进行了一系列合理的非催化、位点特异性突变。其中一些突变导致蛋白质形成不同的二聚体形式,其催化活性显著降低。这些双突变体之一,即Axe2-Y184F-W190P,最近已被过量表达、纯化并结晶。获得的最佳晶体属于正交晶系空间群P212121,晶胞参数a = 71.1、b = 106.0、c = 378.6 Å。使用同步辐射从100 K下的这种快速冷却晶体收集了分辨率为2.3 Å的完整衍射数据集。该数据集目前正用于对二聚体形式的Axe2-Y184F-W190P突变体进行三维结构分析。