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全基因组关联研究鉴定原发性孔源性视网膜脱离的遗传风险基础。

Genome-wide association study identifies genetic risk underlying primary rhegmatogenous retinal detachment.

机构信息

Centre for Population Health Sciences, University of Edinburgh, Edinburgh EH89AG, UK.

出版信息

Hum Mol Genet. 2013 Aug 1;22(15):3174-85. doi: 10.1093/hmg/ddt169. Epub 2013 Apr 11.

Abstract

Rhegmatogenous retinal detachment (RRD) is an important cause of vision loss and can potentially lead to blindness. The underlying pathogenesis is complex and incompletely understood. We applied a two-stage genetic association discovery phase followed by a replication phase in a combined total of 2833 RRD cases and 7871 controls. The discovery phase involved a genome-wide association scan of 867 affected individuals and 1953 controls from Scotland, followed by genotyping and testing 4347 highest ranking or candidate single nucleotide polymorphisms (SNPs) in independent sets of cases (1000) and controls (2912) of Dutch and British origin. None of the SNPs selected reached a Bonferroni-corrected threshold for significance (P < 1.27 × 10(-7)). The strongest association, for rs12960119 (P = 1.58 × 10(-7)) located within an intron of the SS18 gene. Further testing was carried out in independent case-control series from London (846 cases) and Croatia (120 cases). The combined meta-analysis identified one association reaching genome-wide significance for rs267738 (OR = 1.29, P = 2.11 × 10(-8)), a missense coding SNP and eQTL for CERS2 encoding the protein ceramide synthase 2. Several of the top signals showing suggestive significance in the combined meta-analysis encompassed genes with a documented role in cell adhesion or migration, including SS18, TIAM1, TSTA3 and LDB2, which warrant further investigation. This first genetic association study of RRD supports a polygenic component underlying RRD risk since 27.4% of the underlying RRD liability could be explained by the collective additive effects of the genotyped SNP from the discovery genome-wide scan.

摘要

孔源性视网膜脱离(RRD)是视力丧失的重要原因,并可能导致失明。其潜在的发病机制复杂且尚未完全阐明。我们采用两阶段遗传关联发现阶段,随后在总共 2833 例 RRD 病例和 7871 例对照中进行了复制阶段。发现阶段涉及对 867 名受影响个体和来自苏格兰的 1953 名对照进行全基因组关联扫描,随后对荷兰和英国来源的独立病例(1000 例)和对照(2912 例)组中排名最高或候选的 4347 个单核苷酸多态性(SNP)进行基因分型和测试。选择的 SNP 均未达到 Bonferroni 校正的显着性阈值(P <1.27×10(-7))。最强的关联是位于 SS18 基因内含子内的 rs12960119(P=1.58×10(-7))。在来自伦敦(846 例)和克罗地亚(120 例)的独立病例对照系列中进行了进一步的测试。合并的荟萃分析确定了一个与 rs267738 相关的全基因组显着关联(OR=1.29,P=2.11×10(-8)),这是一个错义编码 SNP 和 CERS2 的 eQTL,编码神经酰胺合酶 2。在合并的荟萃分析中,几个具有提示意义的最高信号涵盖了与细胞粘附或迁移有关的基因,包括 SS18、TIAM1、TSTA3 和 LDB2,这值得进一步研究。这是第一项对 RRD 的遗传关联研究,支持 RRD 风险的多基因成分,因为发现全基因组扫描中基因分型 SNP 的累积加性效应对 RRD Liability 的 27.4%可以解释。

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