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Identifying miRNAs, targets and functions.
Brief Bioinform. 2014 Jan;15(1):1-19. doi: 10.1093/bib/bbs075. Epub 2012 Nov 22.
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Site identification in high-throughput RNA-protein interaction data.
Bioinformatics. 2012 Dec 1;28(23):3013-20. doi: 10.1093/bioinformatics/bts569. Epub 2012 Sep 28.
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A least angle regression model for the prediction of canonical and non-canonical miRNA-mRNA interactions.
PLoS One. 2012;7(7):e40634. doi: 10.1371/journal.pone.0040634. Epub 2012 Jul 17.
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MicroRNA genes and their target 3'-untranslated regions are infrequently somatically mutated in ovarian cancers.
PLoS One. 2012;7(4):e35805. doi: 10.1371/journal.pone.0035805. Epub 2012 Apr 20.
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doRiNA: a database of RNA interactions in post-transcriptional regulation.
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miRTar: an integrated system for identifying miRNA-target interactions in human.
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Computational prediction of intronic microRNA targets using host gene expression reveals novel regulatory mechanisms.
PLoS One. 2011;6(6):e19312. doi: 10.1371/journal.pone.0019312. Epub 2011 Jun 9.
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CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins.
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starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.
Nucleic Acids Res. 2011 Jan;39(Database issue):D202-9. doi: 10.1093/nar/gkq1056. Epub 2010 Oct 30.

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