Ivanov Dobril K, Papatheodorou Irene, Ziehm Matthias, Thornton Janet M
EMBL-European Bioinformatics Institute (EBI), Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Mol Biosyst. 2013 Jul;9(7):1756-64. doi: 10.1039/c3mb25485b. Epub 2013 Apr 26.
Several components have been previously identified, that modulate longevity in several species, including the target of rapamycin (TOR) and the Insulin/IGF-1 (IIS) signalling pathways. In order to infer paths and transcriptional feedback loops that are likely to modulate ageing, we manually built a comprehensive and computationally efficient signalling network model of the IIS and TOR pathways in worms. The core insulin transduction is signalling from the sole insulin receptor daf-2 to ultimately inhibit the translocation of the transcription factor daf-16 into the nucleus. Reduction in this core signalling is thought to increase longevity in several species. In addition to this core insulin signalling, we have also recorded in our worm model the transcription factors skn-1 and hif-1, those are also thought to modulate ageing in a daf-16 independent manner. Several paths that are likely to modulate ageing were inferred via a web-based service NetEffects, by utilising perturbed components (rheb-1, let-363, aak-2, daf-2;daf-16 and InR;foxo in worms and flies respectively) from freely available gene expression microarrays. These included "routes" from TOR pathway to transcription factors daf-16, skn-1, hif-1 and daf-16 independent paths via skn-1/hif-1. Paths that could be tested by experimental hypotheses, with respect to relative contribution to longevity, are also discussed. Direct comparison of the IIS and TOR pathways in both worm and fly suggest a remarkable similarity. While similarities in the paths that could modulate ageing in both organisms were noted, differences are also discussed. This approach can also be extended to other pathways and processes.
先前已确定了几个调节多种物种寿命的组成部分,包括雷帕霉素靶蛋白(TOR)和胰岛素/胰岛素样生长因子-1(IIS)信号通路。为了推断可能调节衰老的途径和转录反馈环,我们手动构建了一个全面且计算高效的线虫IIS和TOR信号通路网络模型。核心胰岛素转导是从唯一的胰岛素受体daf-2发出信号,最终抑制转录因子daf-16向细胞核的转运。这种核心信号传导的减少被认为可延长多种物种的寿命。除了这种核心胰岛素信号传导外,我们还在我们的线虫模型中记录了转录因子skn-1和hif-1,它们也被认为以不依赖daf-16的方式调节衰老。通过基于网络的服务NetEffects,利用来自免费可得的基因表达微阵列的受干扰成分(分别在线虫和果蝇中为rheb-1、let-363、aak-2、daf-2;daf-16和InR;foxo),推断出了几条可能调节衰老的途径。这些途径包括从TOR途径到转录因子daf-16、skn-1、hif-1的“路线”以及通过skn-1/hif-1的不依赖daf-16的途径。还讨论了可以通过实验假设来测试的、关于对寿命相对贡献的途径。对线虫和果蝇中IIS和TOR途径的直接比较显示出显著的相似性。虽然注意到了两种生物体中可能调节衰老的途径的相似性,但也讨论了差异。这种方法也可以扩展到其他途径和过程。