Department of Genetics, Eotvos Lorand University, H-1117 Budapest, Pázmány s. 1/C, Hungary. Tel.: +36302686590;
Brief Bioinform. 2013 Sep;14(5):618-32. doi: 10.1093/bib/bbt024. Epub 2013 May 2.
The number of bioinformatics tools and resources that support molecular and cell biology approaches is continuously expanding. Moreover, systems and network biology analyses are accompanied more and more by integrated bioinformatics methods. Traditional information-centered university teaching methods often fail, as (1) it is impossible to cover all existing approaches in the frame of a single course, and (2) a large segment of the current bioinformation can become obsolete in a few years. Signaling network offers an excellent example for teaching bioinformatics resources and tools, as it is both focused and complex at the same time. Here, we present an outline of a university bioinformatics course with four sample practices to demonstrate how signaling network studies can integrate biochemistry, genetics, cell biology and network sciences. We show that several bioinformatics resources and tools, as well as important concepts and current trends, can also be integrated to signaling network studies. The research-type hands-on experiences we show enable the students to improve key competences such as teamworking, creative and critical thinking and problem solving. Our classroom course curriculum can be re-formulated as an e-learning material or applied as a part of a specific training course. The multi-disciplinary approach and the mosaic setup of the course have the additional benefit to support the advanced teaching of talented students.
支持分子和细胞生物学方法的生物信息学工具和资源的数量正在不断增加。此外,系统和网络生物学分析越来越多地伴随着综合生物信息学方法。传统的以信息为中心的大学教学方法往往失败,因为 (1) 不可能在单个课程框架内涵盖所有现有的方法,(2) 当前的大部分生物信息在几年内可能会过时。信号转导网络为生物信息学资源和工具的教学提供了一个极好的例子,因为它既集中又复杂。在这里,我们提出了一个大学生物信息学课程的大纲,其中包括四个示例实践,以展示如何将信号转导网络研究整合到生物化学、遗传学、细胞生物学和网络科学中。我们表明,几个生物信息学资源和工具以及重要的概念和当前趋势也可以整合到信号转导网络研究中。我们展示的研究型实践经验使学生能够提高团队合作、创造性和批判性思维以及解决问题等关键能力。我们的课堂课程可以重新制定为电子学习材料,或作为特定培训课程的一部分应用。多学科方法和课程的镶嵌设置还有助于支持优秀学生的高级教学。