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简单重复序列(SSR)标记在番石榴(Psidium guajava L.)中的转移到四个桃金娘科物种。

Transferability of simple sequence repeat (SSR) markers developed in guava (Psidium guajava L.) to four Myrtaceae species.

机构信息

Department of Botany, Biotechnology Centre, Jai Narain Vyas University, Jodhpur, 342033, Rajasthan, India.

出版信息

Mol Biol Rep. 2013 Aug;40(8):5067-71. doi: 10.1007/s11033-013-2608-1. Epub 2013 May 9.

Abstract

Present study demonstrated the cross-genera transferability of 23 simple sequence repeat (SSR) primer pairs developed for guava (Psidium guajava L.) to four new targets, two species of eucalypts (Eucalyptus citriodora, Eucalyptus camaldulensis), bottlebrush (Callistemon lanceolatus) and clove (Syzygium aromaticum), belonging to the family Myrtaceae and subfamily Myrtoideae. Off the 23 SSR loci assayed, 18 (78.2%) gave cross-amplification in E. citriodora, 14 (60.8%) in E. camaldulensis and 17-17 (73.9%) in C. lanceolatus and S. aromaticum. Eight primer pairs were found to be transferable to all four species. The number of alleles detected at each locus ranged from one to nine, with an average of 4.8, 2.6, 4.5 and 4.6 alleles in E. citriodora, E. camaldulensis, C. lanceolatus and S. aromaticum, respectively. The high levels of cross-genera transferability of guava SSRs may be applicable for the analysis of intra- and inter specific genetic diversity of target species, especially in E. citriodora, C. lanceolatus and S. aromaticum, for which till date no information about EST-derived as well as genomic SSR is available.

摘要

本研究证明了从番石榴(Psidium guajava L.)开发的 23 对简单重复序列(SSR)引物对在四个新目标中的跨属转移能力,这四个新目标分别为两种桉树(Eucalyptus citriodora、Eucalyptus camaldulensis)、瓶刷(Callistemon lanceolatus)和丁香(Syzygium aromaticum),它们都属于桃金娘科和桃金娘亚科。在所检测的 23 个 SSR 位点中,18 个(78.2%)在柠檬桉(E. citriodora)中发生交叉扩增,14 个(60.8%)在赤桉(E. camaldulensis)中发生交叉扩增,17-17 个(73.9%)在瓶刷树(C. lanceolatus)和丁香中发生交叉扩增。有 8 对引物可以转移到所有四个物种。每个位点检测到的等位基因数从 1 到 9 不等,柠檬桉、赤桉、瓶刷树和丁香的平均等位基因数分别为 4.8、2.6、4.5 和 4.6。番石榴 SSR 的跨属高转移能力可适用于目标物种的种内和种间遗传多样性分析,特别是在柠檬桉、瓶刷树和丁香中,因为到目前为止,还没有关于 EST 衍生和基因组 SSR 的信息。

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