Instituto de Biologia, Programa de Pós-graduação em Biologia Vegetal, Universidade Estadual de Campinas, Campinas, Rua Monteiro Lobato 255, Campinas, SP, 13083-862, Brazil.
Departamento de Biologia Vegetal, Instituto de Biologia, Universidade Estadual de Campinas, Rua Monteiro Lobato 255, Campinas, SP, 13083-862, Brazil.
Biochem Genet. 2021 Feb;59(1):219-234. doi: 10.1007/s10528-020-10002-1. Epub 2020 Sep 27.
Polyploidy is a phenomenon that alters the genetic diversity of populations and has been reported as one of the most important evolutionary forces for plant diversification. The Psidium cattleyanum complex comprises a group of wild populations with several ploidy levels reported in the literature. The multiple cytotypes, associated with its wide distribution area, make this species a potential key model for understanding evolutionary processes related to polyploidization. In this study, we isolated and characterized nuclear microsatellite markers of P. cattleyanum and tested their transferability to other nine species of the genus. We performed a preliminary analysis of genetic diversity and population structure in three populations of P. cattleyanum. The three populations analyzed had different chromosome numbers, being polyploid cytotypes (2n = 6x = 66, 2n = 7x = 77 and 2n = 8x = 88). We designed 46 primer pairs and successfully amplified 37 markers, from which the 10 best were selected for analysis. Considering both the PIC and DP values, most of markers were highly informative. The new SSR markers were used to assess the levels of genetic diversity of the populations and detected one population with predominance of sexual reproduction. DAPC analysis pointed the formation of three groups, which corresponded to the populations analyzed. The markers were successfully amplified in related species, with some species presenting 80% transferability. By producing this panel of polymorphic microsatellites, we contribute to the understanding evolution in groups of natural polyploids for future studies.
多倍体是一种改变种群遗传多样性的现象,被报道为植物多样化的最重要进化力量之一。西番莲属(Psidium cattleyanum)复合体由一组野生种群组成,文献中报道了多个倍性水平。该物种的多种细胞型与广泛的分布区域相关,使其成为理解与多倍体化相关的进化过程的潜在关键模型。在这项研究中,我们分离和鉴定了西番莲属的核微卫星标记,并测试了它们在其他 9 个属种中的可转移性。我们对三个西番莲属种群的遗传多样性和种群结构进行了初步分析。分析的三个种群具有不同的染色体数目,是多倍体细胞型(2n=6x=66、2n=7x=77 和 2n=8x=88)。我们设计了 46 对引物,成功扩增了 37 个标记,从中选择了 10 个最好的标记进行分析。考虑到 PIC 和 DP 值,大多数标记都具有高度的信息量。新的 SSR 标记用于评估种群的遗传多样性水平,并检测到一个以有性繁殖为主的种群。DAPC 分析指出形成了三个群体,与分析的种群相对应。标记在相关物种中成功扩增,其中一些物种的可转移性达到 80%。通过产生这组多态微卫星标记,我们为未来的研究贡献了对自然多倍体群体进化的理解。