Suppr超能文献

NMR 和圆二色性监测脂质结合研究表明,FATC 结构域作为磷酸肌醇 3-激酶相关激酶(PIKK)的膜锚的一般作用。

NMR- and circular dichroism-monitored lipid binding studies suggest a general role for the FATC domain as membrane anchor of phosphatidylinositol 3-kinase-related kinases (PIKK).

机构信息

Department of Chemistry, Technische Universität München, Lichtenbergstrasse 4, 85747 Garching, Germany.

出版信息

J Biol Chem. 2013 Jul 5;288(27):20046-63. doi: 10.1074/jbc.M113.467233. Epub 2013 May 13.

Abstract

The FATC domain is shared by all members of the family of phosphatidylinositol-3 kinase-related kinases (PIKKs). It has been shown that the FATC domain plays an important role for the regulation of each PIKK. However, other than an involvement in protein-protein interactions, a common principle for the action of the FATC domain has not been detected. A detailed characterization of the structure and lipid binding properties of the FATC domain of the Ser/Thr kinase target of rapamycin (TOR) revealed that it contains a redox-sensitive membrane anchor in its C terminus. Because the C-terminal regions of the FATC domains of all known PIKKs are rather hydrophobic and especially rich in aromatic residues, we examined whether the ability to interact with lipids and membranes might be a general property. Here, we present the characterization of the interactions with lipids and different membrane mimetics for the FATC domains of human DNA-PKcs, human ATM, human ATR, human SMG-1, and human TRRAP by NMR and CD spectroscopy. The data indicate that all of these can interact with different membrane mimetics and may have different preferences only for membrane properties such as surface charge, curvature, and lipid packing. The oxidized form of the TOR FATC domain is well structured overall and forms an α-helix that is followed by a disulfide-bonded loop. In contrast, the FATC domains of the other PIKKs are rather unstructured in the isolated form and only significantly populate α-helical secondary structure upon interaction with membrane mimetics.

摘要

FATC 结构域为所有磷脂酰肌醇-3 激酶相关激酶(PIKKs)家族成员所共有。已经表明,FATC 结构域对于每种 PIKK 的调节都起着重要作用。然而,除了参与蛋白质-蛋白质相互作用之外,尚未发现 FATC 结构域作用的共同原则。雷帕霉素(TOR)丝氨酸/苏氨酸激酶靶蛋白的 FATC 结构域的结构和脂质结合特性的详细表征表明,其 C 端含有一个氧化还原敏感的膜锚。由于所有已知 PIKKs 的 FATC 结构域的 C 端区域相当疏水,并且富含芳香族残基,因此我们检查了与脂质和膜相互作用的能力是否可能是一种普遍特性。在这里,我们通过 NMR 和 CD 光谱研究了人 DNA-PKcs、人 ATM、人 ATR、人 SMG-1 和人 TRRAP 的 FATC 结构域与脂质和不同膜类似物的相互作用。数据表明,所有这些都可以与不同的膜类似物相互作用,并且可能仅对膜特性(如表面电荷、曲率和脂质堆积)具有不同的偏好。TOR FATC 结构域的氧化形式总体上结构良好,并形成一个α-螺旋,其后是一个二硫键连接的环。相比之下,其他 PIKKs 的 FATC 结构域在分离形式中相当无序,并且仅在与膜类似物相互作用时才会显著形成α-螺旋二级结构。

相似文献

4
Emerging common themes in regulation of PIKKs and PI3Ks.
EMBO J. 2009 Oct 21;28(20):3067-73. doi: 10.1038/emboj.2009.281. Epub 2009 Sep 24.
5
Structural basis for the association of the redox-sensitive target of rapamycin FATC domain with membrane-mimetic micelles.
J Biol Chem. 2010 Mar 5;285(10):7766-75. doi: 10.1074/jbc.M109.058404. Epub 2009 Dec 30.
8
NMR- and MD simulation-based structural characterization of the membrane-associating FATC domain of ataxia telangiectasia mutated.
J Biol Chem. 2019 Apr 26;294(17):7098-7112. doi: 10.1074/jbc.RA119.007653. Epub 2019 Mar 13.
10
Target of rapamycin FATC domain as a general membrane anchor: The FKBP-12 like domain of FKBP38 as a case study.
Protein Sci. 2018 Feb;27(2):546-560. doi: 10.1002/pro.3321. Epub 2017 Oct 30.

引用本文的文献

2
Membrane Interactions of the Peroxisomal Proteins PEX5 and PEX14.
Front Cell Dev Biol. 2021 Apr 16;9:651449. doi: 10.3389/fcell.2021.651449. eCollection 2021.
3
NMR- and MD simulation-based structural characterization of the membrane-associating FATC domain of ataxia telangiectasia mutated.
J Biol Chem. 2019 Apr 26;294(17):7098-7112. doi: 10.1074/jbc.RA119.007653. Epub 2019 Mar 13.
4
Target of rapamycin FATC domain as a general membrane anchor: The FKBP-12 like domain of FKBP38 as a case study.
Protein Sci. 2018 Feb;27(2):546-560. doi: 10.1002/pro.3321. Epub 2017 Oct 30.
5
ATR-mediated regulation of nuclear and cellular plasticity.
DNA Repair (Amst). 2016 Aug;44:143-150. doi: 10.1016/j.dnarep.2016.05.020. Epub 2016 May 16.

本文引用的文献

1
Microscopic rates of peptide-phospholipid bilayer interactions from single-molecule residence times.
J Am Chem Soc. 2012 Dec 5;134(48):19652-60. doi: 10.1021/ja306074k. Epub 2012 Nov 26.
2
Cis-9,trans-11-conjugated linoleic acid affects lipid raft composition and sensitizes human colorectal adenocarcinoma HT-29 cells to X-radiation.
Biochim Biophys Acta. 2013 Jan;1830(1):2233-42. doi: 10.1016/j.bbagen.2012.10.015. Epub 2012 Oct 30.
3
Metabolic regulation, mitochondria and the life-prolonging effect of rapamycin: a mini-review.
Gerontology. 2012;58(6):524-30. doi: 10.1159/000342204. Epub 2012 Aug 30.
7
mTOR signaling in growth control and disease.
Cell. 2012 Apr 13;149(2):274-93. doi: 10.1016/j.cell.2012.03.017.
8
SMG-1 and mTORC1 act antagonistically to regulate response to injury and growth in planarians.
PLoS Genet. 2012;8(3):e1002619. doi: 10.1371/journal.pgen.1002619. Epub 2012 Mar 29.
9
New insights into the roles of ATM and DNA-PKcs in the cellular response to oxidative stress.
Cancer Lett. 2012 Dec 31;327(1-2):103-10. doi: 10.1016/j.canlet.2011.12.004. Epub 2011 Dec 9.
10
The ATM protein kinase and cellular redox signaling: beyond the DNA damage response.
Trends Biochem Sci. 2012 Jan;37(1):15-22. doi: 10.1016/j.tibs.2011.10.002. Epub 2011 Nov 11.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验