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利用未培养细菌作为新型生物合成酶学资源的宏基因组学方法。

Metagenomic approaches for exploiting uncultivated bacteria as a resource for novel biosynthetic enzymology.

作者信息

Wilson Micheal C, Piel Jörn

机构信息

Institute for Microbiology, Eidgenössische Technische Hochschule-ETH Zurich, Wolfgang-Pauli-Strasse 10, 8093 Zurich, Switzerland.

出版信息

Chem Biol. 2013 May 23;20(5):636-47. doi: 10.1016/j.chembiol.2013.04.011.

Abstract

Most biologically active microbial natural products are known from strains that can be isolated and cultivated in the laboratory. However, the genomics era has revealed that cultured bacteria represent a mere fraction of total estimated bacterial biodiversity. With the development of community genomics, termed metagenomics, the uncultivated majority became accessible for functional analysis. Through metagenomic studies, novel biocatalysts and biosynthetic pathways are being discovered at a pace previously not possible using traditional molecular biology techniques. Additionally, the study of uncultivated bacteria has provided valuable insights into previously overlooked biocatalysts from cultured strains. This perspective highlights recent discoveries from metagenomics of uncultivated bacteria and discusses the impact of those findings on the field of natural products.

摘要

大多数具有生物活性的微生物天然产物来自于能够在实验室中分离和培养的菌株。然而,基因组学时代已经表明,培养的细菌仅仅占估计的细菌总生物多样性的一小部分。随着群落基因组学(即宏基因组学)的发展,未培养的大多数细菌开始能够进行功能分析。通过宏基因组学研究,正以前所未有的速度发现新的生物催化剂和生物合成途径,而这是使用传统分子生物学技术无法实现的。此外,对未培养细菌的研究为之前被忽视的来自培养菌株的生物催化剂提供了有价值的见解。本文阐述了未培养细菌宏基因组学的最新发现,并讨论了这些发现对天然产物领域的影响。

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