Department of Physiology, University of Toronto, Toronto, ON, Canada; Heart and Stroke/Richard Lewar Centre of Cardiovascular Excellence, Toronto, ON, Canada.
Proteomics. 2013 Aug;13(15):2324-34. doi: 10.1002/pmic.201200455. Epub 2013 Jul 1.
In-depth proteomic analyses offer a systematic way to investigate protein alterations in disease and, as such, can be a powerful tool for the identification of novel biomarkers. Here, we analyzed proteomic data from a transgenic mouse model with cardiac-specific overexpression of activated calcineurin (CnA), which results in severe cardiac hypertrophy. We applied statistically filtering and false discovery rate correction methods to identify 52 proteins that were significantly different in the CnA hearts compared to controls. Subsequent informatic analysis consisted of comparison of these 52 CnA proteins to another proteomic dataset of heart failure, three available independent microarray datasets, and correlation of their expression with the human plasma and urine proteome. Following this filtering strategy, four proteins passed these selection criteria, including myosin heavy chain 7, insulin-like growth factor-binding protein 7, annexin A2, and desmin. We assessed expression levels of these proteins in mouse plasma by immunoblotting, and observed significantly different levels of expression between healthy and failing mice for all four proteins. We verified antibody cross-reactivity by examining human cardiac explant tissue by immunoblotting. Finally, we assessed protein levels in plasma samples obtained from four unaffected and four heart failure patients and demonstrated that all four proteins increased between twofold and 150-fold in heart failure. We conclude that MYH7, IGFBP7, ANXA2, and DESM are all excellent candidate plasma biomarkers of heart failure in mouse and human.
深入的蛋白质组学分析提供了一种系统的方法来研究疾病中的蛋白质变化,因此可以成为鉴定新型生物标志物的有力工具。在这里,我们分析了一种转基因小鼠模型的蛋白质组学数据,该模型在心脏中特异性过表达激活的钙调神经磷酸酶(CnA),导致严重的心脏肥大。我们应用了统计学过滤和错误发现率校正方法,以鉴定出在 CnA 心脏与对照相比差异显著的 52 种蛋白质。随后的信息学分析包括将这 52 种 CnA 蛋白与心力衰竭的另一个蛋白质组数据集、三个可用的独立微阵列数据集进行比较,并将它们的表达与人类血浆和尿液蛋白质组进行相关。根据这一过滤策略,有四种蛋白质通过了这些选择标准,包括肌球蛋白重链 7、胰岛素样生长因子结合蛋白 7、膜联蛋白 A2 和结蛋白。我们通过免疫印迹法评估了这些蛋白质在小鼠血浆中的表达水平,观察到健康和衰竭小鼠之间所有四种蛋白质的表达水平均有显著差异。我们通过检查免疫印迹法的人心肌外植体组织来验证抗体的交叉反应性。最后,我们评估了从四名未受影响和四名心力衰竭患者获得的血浆样本中的蛋白质水平,并证明在心力衰竭中,所有四种蛋白质的水平均增加了 2 倍至 150 倍。我们得出结论,MYH7、IGFBP7、ANXA2 和 DESM 都是小鼠和人类心力衰竭的优秀候选血浆生物标志物。