Department of Physical Chemistry, Tarbiat Modares University, P.O. Box 14115-117, Tehran, Iran.
J Mol Graph Model. 2013 Jul;44:33-43. doi: 10.1016/j.jmgm.2013.04.012. Epub 2013 May 14.
The structure and dynamics of water confined in single-walled silicon carbon nanotubes (SWSiCNTs) are investigated using molecular dynamics (MD) simulations. The density of water inside SWSiCNTs is reported, and an equation is suggested to predict the density of water inside SWSiCNTs. Interestingly, the water diffusion coefficients (D) here are larger compared with those in SWCNTs and single-walled boron-nitride nanotubes (SWBNNTs). Furthermore, water inside zigzag SWCNTs has a lower diffusion coefficient than water inside armchair SWCNTs. A thorough analysis of the density profiles, hydrogen bonding, and water molecule orientation inside SWSiCNTs is presented to explore the mechanism behind the diffusive behavior of water observed here. It is shown here, by mean square displacement (MSD) analysis, that water molecules inside SWSiCNTs diffuse with a ballistic motion mechanism for up to 500ps. Additionally it is confirmed here for the first time that water molecules confined in the SWSiCNTs with diameters of less than 10Å obey the single-file diffusion mechanism at time scales in excess of 500ps. The orientation of water molecules inside SWSiCNTs could be a good explanation for the difference between the diffusion coefficient in (6,6) and (10,0) SWSiCNTs. Finally, a PMF analysis explains the difficulty of water entrance into SWSiCNTs and also the different water self-diffusion inside armchair and zigzag SWSiCNTs. These results are motivating reasons to use SWSiCNTs in nanoscale biochannels, for instance, in drug-delivery applications.
采用分子动力学(MD)模拟研究了单壁硅碳纳米管(SWSiCNTs)中受限水的结构和动力学。报道了 SWSiCNTs 内水的密度,并提出了一个预测 SWSiCNTs 内水密度的方程。有趣的是,这里的水扩散系数(D)比 SWCNTs 和单壁氮化硼纳米管(SWBNNTs)中的大。此外,锯齿形 SWCNTs 内的水扩散系数低于扶手椅形 SWCNTs 内的水。通过对 SWSiCNTs 内密度分布、氢键和水分子取向的深入分析,探讨了观察到的水扩散行为的机制。通过均方根位移(MSD)分析表明,SWSiCNTs 内的水分子在长达 500ps 的时间内以弹道运动机制扩散。此外,首次在这里证实,直径小于 10Å 的 SWSiCNTs 中受限的水分子在超过 500ps 的时间尺度上遵循单分子扩散机制。SWSiCNTs 内水分子的取向可以很好地解释(6,6)和(10,0)SWSiCNTs 中扩散系数的差异。最后,PMF 分析解释了水进入 SWSiCNTs 的困难以及扶手椅形和锯齿形 SWSiCNTs 内水自扩散的不同。这些结果为在纳米尺度生物通道中使用 SWSiCNTs 提供了动机,例如在药物输送应用中。