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无指定起始参数的停留时间分布的指数和拟合。

Exponential sum-fitting of dwell-time distributions without specifying starting parameters.

机构信息

Department of Physiology and Biophysics, University of Miami Miller School of Medicine, Miami, FL, USA.

出版信息

Biophys J. 2013 Jun 4;104(11):2383-91. doi: 10.1016/j.bpj.2013.04.030.

Abstract

Fitting dwell-time distributions with sums of exponentials is widely used to characterize histograms of open- and closed-interval durations recorded from single ion channels, as well as for other physical phenomena. However, it can be difficult to identify the contributing exponential components. Here we extend previous methods of exponential sum-fitting to present a maximum-likelihood approach that consistently detects all significant exponentials without the need for user-specified starting parameters. Instead of searching for exponentials, the fitting starts with a very large number of initial exponentials with logarithmically spaced time constants, so that none are missed. Maximum-likelihood fitting then determines the areas of all the initial exponentials keeping the time constants fixed. In an iterative manner, with refitting after each step, the analysis then removes exponentials with negligible area and combines closely spaced adjacent exponentials, until only those exponentials that make significant contributions to the dwell-time distribution remain. There is no limit on the number of significant exponentials and no starting parameters need be specified. We demonstrate fully automated detection for both experimental and simulated data, as well as for classical exponential-sum-fitting problems.

摘要

用指数和来拟合停留时间分布在将从单离子通道记录的开放和关闭间隔持续时间的直方图特征化方面得到了广泛应用,以及用于其他物理现象。然而,确定贡献的指数分量可能很困难。在这里,我们扩展了先前的指数和拟合方法,提出了一种最大似然方法,该方法无需用户指定的起始参数即可一致地检测到所有显著的指数。拟合不是从寻找指数开始,而是从具有对数间隔时间常数的大量初始指数开始,因此不会遗漏任何指数。然后,最大似然拟合确定所有初始指数的面积,同时保持时间常数固定。以迭代的方式,在每次步骤后重新拟合,分析然后去除面积可以忽略不计的指数,并合并紧密间隔的相邻指数,直到只有那些对停留时间分布有显著贡献的指数仍然存在。显著指数的数量没有限制,也不需要指定起始参数。我们展示了对实验和模拟数据以及经典指数和拟合问题的完全自动检测。

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