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系统生物学方法通过整合 microRNA 和信使 RNA 表达谱分析来描述不稳定型心绞痛患者血瘀证的生物标志物。

A Systems Biology Approach to Characterize Biomarkers for Blood Stasis Syndrome of Unstable Angina Patients by Integrating MicroRNA and Messenger RNA Expression Profiling.

机构信息

Department of Cardiology, Guang'anmen Hospital, China Academy of Chinese Medical Science, Beixiange 5, Xicheng District, Beijing 100053, China.

出版信息

Evid Based Complement Alternat Med. 2013;2013:510208. doi: 10.1155/2013/510208. Epub 2013 May 14.

Abstract

Blood stasis syndrome (BSS) has been considered to be the major type of syndromes in unstable angina (UA) patients. The aim of this study was to find the systems biology-based microRNA (miRNA) and mRNA expression biomarkers for BSS of UA. We identified 1081 mRNAs and 25 miRNAs differentially expressed between BSS of UA patients and healthy controls by microarrays. We used DAVID, miRTrail, and the protein-protein interactions method to explore the related pathways and networks of differentially expressed miRNAs and mRNAs. By combining the results of pathways and networks, we found that the upregulation of miR-146b-5p may induce the downregulation of CALR to attenuate inflammation and the upregulation of miR-199a-5p may induce the downregulation of TP53 to inhibit apoptosis in BSS of UA patients. The expression patterns of miR-146b-5p, miR-199a-5p, CALR, and TP53 were confirmed by qRT-PCR in an independent validation cohort including BBS of UA patients, non-BBS of UA patients, and healthy controls. miR-146b-5p, miR-199a-5p, CALR, and TP53 could be significant biomarkers of BSS of UA patients. The systems biology-based miRNA and mRNA expression biomarkers for the BSS of UA may be helpful for the further stratification of UA patients when deciding on interventions or clinical trials.

摘要

血瘀证(BSS)被认为是不稳定型心绞痛(UA)患者的主要证候类型。本研究旨在寻找基于系统生物学的 miRNA(miRNA)和 mRNA 表达生物标志物,用于 UA 的 BSS。我们通过微阵列鉴定了 1081 个 mRNA 和 25 个 miRNA 在 UA 患者的 BSS 与健康对照组之间存在差异表达。我们使用 DAVID、miRTrail 和蛋白质-蛋白质相互作用方法来探索差异表达的 miRNA 和 mRNA 的相关途径和网络。通过结合途径和网络的结果,我们发现 miR-146b-5p 的上调可能会导致 CALR 的下调,从而减轻炎症,而 miR-199a-5p 的上调可能会导致 TP53 的下调,从而抑制 UA 患者的 BSS 中的细胞凋亡。miR-146b-5p、miR-199a-5p、CALR 和 TP53 的表达模式通过 qRT-PCR 在包括 UA 患者的 BBS、非-BBS 的 UA 患者和健康对照组的独立验证队列中得到了验证。miR-146b-5p、miR-199a-5p、CALR 和 TP53 可能是 UA 患者 BSS 的显著生物标志物。基于系统生物学的 UA 的 BSS 的 miRNA 和 mRNA 表达生物标志物可能有助于进一步对 UA 患者进行分层,以决定干预或临床试验。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1832/3666437/2ba91123ac67/ECAM2013-510208.001.jpg

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