INRA-Université de Bourgogne, UMR Microbiologie du Sol et de l'Environnement, CMSE, 17, rue Sully, B.V. 86510, 21065 Dijon, Cedex, France. Université de Bourgogne, UMR 1229, CMSE, 17, rue Sully, B.V. 86510, 21065 Dijon, Cedex, France. Platform GenoSol, INRA-Université de Bourgogne, CMSE, 17, rue Sully, B.V. 86510, 21065 Dijon, Cedex, France. Université de Lyon, F-69000, Lyon; Université Lyon 1; CNRS, UMR5558, Laboratoire de Biométrie et Biologie Evolutive, F-69622, Villeurbanne Cedex, France. INRA Orléans - US 1106, Unité INFOSOL, Avenue de la Pomme de Pin - BP 20619 Ardon 45166 Olivet, Cedex, France.
Environ Microbiol Rep. 2009 Aug;1(4):251-5. doi: 10.1111/j.1758-2229.2009.00040.x. Epub 2009 Jun 22.
This study provides the first maps of variations in bacterial community structure on a broad scale based on genotyping of DNA extracts from 593 soils from four different regions of France (North, Brittany, South-East and Landes). Soils were obtained from the soil library of RMQS ('Réseau de Mesures de la Qualité des Sols' = French soil quality monitoring network). The relevance of a biogeographic approach for studying bacterial communities was demonstrated by the great variability in community structure and specific geographical patterns within and between the four regions. The data indicated that the distribution of bacterial community composition might be more related to local factors such as soil type and land cover than to more global factors such as climatic and geomorphologic characteristics. Furthermore, the regional pools of biodiversity could be ordered: South-East ≥ North > Brittany > Landes, according to the observed regional variability of the bacterial communities, which could be helpful for improving land use in accordance with soil biodiversity management.
本研究基于从法国四个不同地区(北部、布列塔尼、东南部和朗德)的 593 个土壤的 DNA 提取物进行基因分型,首次绘制了细菌群落结构变化的图谱。土壤取自 RMQS(“法国土壤质量监测网络”)的土壤文库。通过研究细菌群落,生物地理方法的相关性得到了证明,因为在四个地区内和之间,群落结构和特定的地理模式具有很大的可变性。这些数据表明,细菌群落组成的分布可能与土壤类型和土地覆被等局部因素的关系更为密切,而与气候和地貌特征等更全局的因素关系不大。此外,根据观察到的细菌群落的区域变异性,可以对区域生物多样性进行排序:东南部>北部>布列塔尼>朗德,这有助于根据土壤生物多样性管理改善土地利用。