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基于计算机的疾病相关 STIL 突变体预测及其对着丝粒蛋白 J(CENPJ)募集的影响。

In silico prediction of a disease-associated STIL mutant and its affect on the recruitment of centromere protein J (CENPJ).

机构信息

Bioinformatics Division, School of Bio Sciences and Technology, Vellore Institute of Technology University, Vellore 632014, Tamil Nadu, India.

出版信息

FEBS Open Bio. 2012 Sep 25;2:285-93. doi: 10.1016/j.fob.2012.09.003. Print 2012.

Abstract

Human STIL (SCL/TAL1 interrupting locus) protein maintains centriole stability and spindle pole localisation. It helps in recruitment of CENPJ (Centromere protein J)/CPAP (centrosomal P4.1-associated protein) and other centrosomal proteins. Mutations in STIL protein are reported in several disorders, especially in deregulation of cell cycle cascades. In this work, we examined the non-synonymous single nucleotide polymorphisms (nsSNPs) reported in STIL protein for their disease association. Different SNP prediction tools were used to predict disease-associated nsSNPs. Our evaluation technique predicted rs147744459 (R242C) as a highly deleterious disease-associated nsSNP and its interaction behaviour with CENPJ protein. Molecular modelling, docking and molecular dynamics simulation were conducted to examine the structural consequences of the predicted disease-associated mutation. By molecular dynamic simulation we observed structural consequences of R242C mutation which affects interaction of STIL and CENPJ functional domains. The result obtained in this study will provide a biophysical insight into future investigations of pathological nsSNPs using a computational platform.

摘要

人类 STIL(SCL/TAL1 中断基因座)蛋白维持着中心体的稳定性和纺锤体极定位。它有助于招募 CENPJ(着丝粒蛋白 J)/CPAP(中心体 P4.1 相关蛋白)和其他中心体蛋白。STIL 蛋白的突变已在多种疾病中被报道,特别是在细胞周期级联的失调中。在这项工作中,我们研究了 STIL 蛋白中报道的非同义单核苷酸多态性(nsSNP)与疾病的关联。使用不同的 SNP 预测工具来预测与疾病相关的 nsSNP。我们的评估技术预测 rs147744459(R242C)为高度有害的与疾病相关的 nsSNP,及其与 CENPJ 蛋白的相互作用行为。进行了分子建模、对接和分子动力学模拟,以检查预测的与疾病相关的突变的结构后果。通过分子动力学模拟,我们观察到 R242C 突变的结构后果,该突变影响 STIL 和 CENPJ 功能域的相互作用。本研究的结果将为使用计算平台对病理性 nsSNP 进行未来研究提供生物物理见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6fd1/3678130/4198bd04ba77/gr1.jpg

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