结构生物学：甲酸嘧啶（FaPy）损伤与DNA突变 - Suppr

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Structural biology: FaPy lesions and DNA mutations.

作者信息

Gates Kent S

机构信息

Department of Chemistry, University of Missouri, Columbia, Missouri, USA.

出版信息

Nat Chem Biol. 2013 Jul;9(7):412-4. doi: 10.1038/nchembio.1274.

DOI:10.1038/nchembio.1274

PMID:23774871

Abstract

摘要

相似文献

Structural biology: FaPy lesions and DNA mutations.

Nat Chem Biol. 2013 Jul;9(7):412-4. doi: 10.1038/nchembio.1274.

Genetic effects of oxidative DNA damages: comparative mutagenesis of the imidazole ring-opened formamidopyrimidines (Fapy lesions) and 8-oxo-purines in simian kidney cells.

Nucleic Acids Res. 2006 May 5;34(8):2305-15. doi: 10.1093/nar/gkl099. Print 2006.

Interaction of DNA containing Fapy.dA or its C-nucleoside analogues with base excision repair enzymes. Implications for mutagenesis and enzyme inhibition.

Biochemistry. 2002 Dec 31;41(52):15838-44. doi: 10.1021/bi025903e.

Unexpected non-Hoogsteen-based mutagenicity mechanism of FaPy-DNA lesions.

Nat Chem Biol. 2013 Jul;9(7):455-61. doi: 10.1038/nchembio.1254. Epub 2013 May 19.

Mutagenic potential of nitrogen mustard-induced formamidopyrimidine DNA adduct: Contribution of the non-canonical α-anomer.

J Biol Chem. 2017 Nov 17;292(46):18790-18799. doi: 10.1074/jbc.M117.802520. Epub 2017 Sep 28.

The formamidopyrimidines: purine lesions formed in competition with 8-oxopurines from oxidative stress.

Acc Chem Res. 2012 Apr 17;45(4):588-97. doi: 10.1021/ar2002182. Epub 2011 Nov 11.

Imidazole ring-opened DNA purines and their biological significance.

J Biochem Mol Biol. 2003 Jan 31;36(1):12-9. doi: 10.5483/bmbrep.2003.36.1.012.

An intercalated and thermally stable FAPY adduct of aflatoxin B1 in a DNA duplex: structural refinement from 1H NMR.

Biochemistry. 1998 Mar 31;37(13):4374-87. doi: 10.1021/bi9718292.

Fapy.dG instructs Klenow exo(-) to misincorporate deoxyadenosine.

J Am Chem Soc. 2002 Jun 26;124(25):7278-9. doi: 10.1021/ja026522r.

Probing the configurations of formamidopyrimidine lesions Fapy.dA and Fapy.dG in DNA using endonuclease IV.

Biochemistry. 2004 Oct 26;43(42):13397-403. doi: 10.1021/bi049035s.

引用本文的文献

Bypass of the Major Alkylative DNA Lesion by Human DNA Polymerase η.

Molecules. 2019 Oct 31;24(21):3928. doi: 10.3390/molecules24213928.

Mammalian DNA Polymerase Kappa Activity and Specificity.

Molecules. 2019 Aug 1;24(15):2805. doi: 10.3390/molecules24152805.

Structural and Kinetic Studies of the Effect of Guanine N7 Alkylation and Metal Cofactors on DNA Replication.

Biochemistry. 2018 Aug 28;57(34):5105-5116. doi: 10.1021/acs.biochem.8b00331. Epub 2018 Aug 13.

N7 methylation alters hydrogen-bonding patterns of guanine in duplex DNA.

J Am Chem Soc. 2015 Nov 11;137(44):14067-70. doi: 10.1021/jacs.5b10172. Epub 2015 Nov 2.

本文引用的文献

Unexpected non-Hoogsteen-based mutagenicity mechanism of FaPy-DNA lesions.

Nat Chem Biol. 2013 Jul;9(7):455-61. doi: 10.1038/nchembio.1254. Epub 2013 May 19.

Solution structure of duplex DNA containing a β-carba-Fapy-dG lesion.

Chem Res Toxicol. 2012 Nov 19;25(11):2423-31. doi: 10.1021/tx300290b. Epub 2012 Aug 29.

The formamidopyrimidines: purine lesions formed in competition with 8-oxopurines from oxidative stress.

Acc Chem Res. 2012 Apr 17;45(4):588-97. doi: 10.1021/ar2002182. Epub 2011 Nov 11.

An overview of chemical processes that damage cellular DNA: spontaneous hydrolysis, alkylation, and reactions with radicals.

Chem Res Toxicol. 2009 Nov;22(11):1747-60. doi: 10.1021/tx900242k.

Age to survive: DNA damage and aging.

Trends Genet. 2008 Feb;24(2):77-85. doi: 10.1016/j.tig.2007.11.004. Epub 2008 Jan 14.

Genetic effects of oxidative DNA damages: comparative mutagenesis of the imidazole ring-opened formamidopyrimidines (Fapy lesions) and 8-oxo-purines in simian kidney cells.

Nucleic Acids Res. 2006 May 5;34(8):2305-15. doi: 10.1093/nar/gkl099. Print 2006.

Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.

EMBO J. 2004 Sep 1;23(17):3452-61. doi: 10.1038/sj.emboj.7600354. Epub 2004 Aug 5.

Studies on N4-(2-deoxy-D-pentofuranosyl)-4,6-diamino-5-formamidopyrimidine (Fapy.dA) and N6-(2-deoxy-D-pentofuranosyl)-6-diamino-5-formamido-4-hydroxypyrimidine (Fapy.dG).

Biochemistry. 2001 Dec 25;40(51):15856-61. doi: 10.1021/bi011490q.

Deoxyguanosine-deoxyadenosine pairing in the d(C-G-A-G-A-A-T-T-C-G-C-G) duplex: conformation and dynamics at and adjacent to the dG X dA mismatch site.

Biochemistry. 1984 Jul 3;23(14):3207-17. doi: 10.1021/bi00309a015.

Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations.

Proc Natl Acad Sci U S A. 1986 Apr;83(8):2402-6. doi: 10.1073/pnas.83.8.2402.

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Structural biology: FaPy lesions and DNA mutations.

作者信息

Gates Kent S

机构信息

Department of Chemistry, University of Missouri, Columbia, Missouri, USA.

出版信息

Nat Chem Biol. 2013 Jul;9(7):412-4. doi: 10.1038/nchembio.1274.

DOI:10.1038/nchembio.1274

PMID:23774871

Abstract

摘要

相似文献

Structural biology: FaPy lesions and DNA mutations.

Nat Chem Biol. 2013 Jul;9(7):412-4. doi: 10.1038/nchembio.1274.

Genetic effects of oxidative DNA damages: comparative mutagenesis of the imidazole ring-opened formamidopyrimidines (Fapy lesions) and 8-oxo-purines in simian kidney cells.

Nucleic Acids Res. 2006 May 5;34(8):2305-15. doi: 10.1093/nar/gkl099. Print 2006.

Interaction of DNA containing Fapy.dA or its C-nucleoside analogues with base excision repair enzymes. Implications for mutagenesis and enzyme inhibition.

Biochemistry. 2002 Dec 31;41(52):15838-44. doi: 10.1021/bi025903e.

Unexpected non-Hoogsteen-based mutagenicity mechanism of FaPy-DNA lesions.

Nat Chem Biol. 2013 Jul;9(7):455-61. doi: 10.1038/nchembio.1254. Epub 2013 May 19.

Mutagenic potential of nitrogen mustard-induced formamidopyrimidine DNA adduct: Contribution of the non-canonical α-anomer.

J Biol Chem. 2017 Nov 17;292(46):18790-18799. doi: 10.1074/jbc.M117.802520. Epub 2017 Sep 28.

The formamidopyrimidines: purine lesions formed in competition with 8-oxopurines from oxidative stress.

Acc Chem Res. 2012 Apr 17;45(4):588-97. doi: 10.1021/ar2002182. Epub 2011 Nov 11.

Imidazole ring-opened DNA purines and their biological significance.

J Biochem Mol Biol. 2003 Jan 31;36(1):12-9. doi: 10.5483/bmbrep.2003.36.1.012.

An intercalated and thermally stable FAPY adduct of aflatoxin B1 in a DNA duplex: structural refinement from 1H NMR.

Biochemistry. 1998 Mar 31;37(13):4374-87. doi: 10.1021/bi9718292.

Fapy.dG instructs Klenow exo(-) to misincorporate deoxyadenosine.

J Am Chem Soc. 2002 Jun 26;124(25):7278-9. doi: 10.1021/ja026522r.

Probing the configurations of formamidopyrimidine lesions Fapy.dA and Fapy.dG in DNA using endonuclease IV.

Biochemistry. 2004 Oct 26;43(42):13397-403. doi: 10.1021/bi049035s.

引用本文的文献

Bypass of the Major Alkylative DNA Lesion by Human DNA Polymerase η.

Molecules. 2019 Oct 31;24(21):3928. doi: 10.3390/molecules24213928.

Mammalian DNA Polymerase Kappa Activity and Specificity.

Molecules. 2019 Aug 1;24(15):2805. doi: 10.3390/molecules24152805.

Structural and Kinetic Studies of the Effect of Guanine N7 Alkylation and Metal Cofactors on DNA Replication.

Biochemistry. 2018 Aug 28;57(34):5105-5116. doi: 10.1021/acs.biochem.8b00331. Epub 2018 Aug 13.

N7 methylation alters hydrogen-bonding patterns of guanine in duplex DNA.

J Am Chem Soc. 2015 Nov 11;137(44):14067-70. doi: 10.1021/jacs.5b10172. Epub 2015 Nov 2.

本文引用的文献

Unexpected non-Hoogsteen-based mutagenicity mechanism of FaPy-DNA lesions.

Nat Chem Biol. 2013 Jul;9(7):455-61. doi: 10.1038/nchembio.1254. Epub 2013 May 19.

Solution structure of duplex DNA containing a β-carba-Fapy-dG lesion.

Chem Res Toxicol. 2012 Nov 19;25(11):2423-31. doi: 10.1021/tx300290b. Epub 2012 Aug 29.

The formamidopyrimidines: purine lesions formed in competition with 8-oxopurines from oxidative stress.

Acc Chem Res. 2012 Apr 17;45(4):588-97. doi: 10.1021/ar2002182. Epub 2011 Nov 11.

An overview of chemical processes that damage cellular DNA: spontaneous hydrolysis, alkylation, and reactions with radicals.

Chem Res Toxicol. 2009 Nov;22(11):1747-60. doi: 10.1021/tx900242k.

Age to survive: DNA damage and aging.

Trends Genet. 2008 Feb;24(2):77-85. doi: 10.1016/j.tig.2007.11.004. Epub 2008 Jan 14.

Genetic effects of oxidative DNA damages: comparative mutagenesis of the imidazole ring-opened formamidopyrimidines (Fapy lesions) and 8-oxo-purines in simian kidney cells.

Nucleic Acids Res. 2006 May 5;34(8):2305-15. doi: 10.1093/nar/gkl099. Print 2006.

Structural basis for the dual coding potential of 8-oxoguanosine by a high-fidelity DNA polymerase.

EMBO J. 2004 Sep 1;23(17):3452-61. doi: 10.1038/sj.emboj.7600354. Epub 2004 Aug 5.

Studies on N4-(2-deoxy-D-pentofuranosyl)-4,6-diamino-5-formamidopyrimidine (Fapy.dA) and N6-(2-deoxy-D-pentofuranosyl)-6-diamino-5-formamido-4-hydroxypyrimidine (Fapy.dG).

Biochemistry. 2001 Dec 25;40(51):15856-61. doi: 10.1021/bi011490q.

Deoxyguanosine-deoxyadenosine pairing in the d(C-G-A-G-A-A-T-T-C-G-C-G) duplex: conformation and dynamics at and adjacent to the dG X dA mismatch site.

Biochemistry. 1984 Jul 3;23(14):3207-17. doi: 10.1021/bi00309a015.

Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations.

Proc Natl Acad Sci U S A. 1986 Apr;83(8):2402-6. doi: 10.1073/pnas.83.8.2402.