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应用时间序列分析比较奶样微生物检验结果中乳腺炎病原菌的流行病学行为。

Comparison of the epidemiological behavior of mastitis pathogens by applying time-series analysis in results of milk samples submitted for microbiological examination.

机构信息

INVESAGA, Investigación en Sanidad Animal de Galicia, Universidad de Santiago de Compostela, Santiago de Compostela, Spain.

出版信息

Vet Res Commun. 2013 Dec;37(4):259-67. doi: 10.1007/s11259-013-9570-1. Epub 2013 Jun 19.

DOI:10.1007/s11259-013-9570-1
PMID:23779256
Abstract

The objective of this study is to examine and compare the trends of mastitis pathogens in quarter milk samples (n = 240,232) submitted for microbiological examination at the Milk Analysis Laboratory (L.I.G.A.L.) at Galicia, Spain from June 2005 to September 2011. Autoregressive Integrated Moving Average (ARIMA) models and multivariate statistical techniques such as Cluster Analysis were used in order to detect seasonal trends and similarities between the series trends and to classify mastitis pathogens into relatively homogeneous groups. The decrease of bulk milk somatic cell counts achieved by the mastitis control program, developed in recent years in this region, is the result of the decrease in IMI caused by a limited number of mastitis pathogens. The obtained results reflect a greater complexity in the behavior of mastitis pathogens, unlike the traditional classification into contagious or environmental. Staphylococcus aureus showed a trend similar to Streptococcus dysgalactiae, a mastitis pathogen can behave in both a contagious and an environmental manner. Among the traditionally considered environmental mastitis pathogens, Strep. uberis showed a different behavior to Escherichia coli and Klebsiella pneumoniae. Coagulase-negative staphylococci (CNS) species and Streptococcus other than Strep. agalactiae showed differences in the trend model. Time-series analysis and multivariate statistical techniques, such as Cluster Analysis, could be powerful tools to assess the isolation trend of mastitis pathogens because of their ability to cope with stochastic dependence of consecutive data. Furthermore, they could be used to identify the epidemiological behavior of mastitis pathogens using the results of milk samples submitted for routine microbiological examination, by classifying them into relatively homogeneous groups.

摘要

本研究的目的是检验和比较 2005 年 6 月至 2011 年 9 月间西班牙加利西亚 Milk Analysis Laboratory(L.I.G.A.L.)提交的用于微生物检查的四分奶样本(n = 240232)中乳腺炎病原体的趋势。使用自回归综合移动平均(ARIMA)模型和聚类分析等多元统计技术,以检测季节性趋势以及系列趋势之间的相似性,并将乳腺炎病原体分类为相对同质的组。近年来,该地区开展的乳腺炎控制计划降低了牛奶体细胞计数,这是由少数乳腺炎病原体引起的 IMI 减少所致。所获得的结果反映了乳腺炎病原体行为的更大复杂性,与传统的传染性或环境性分类不同。金黄色葡萄球菌的趋势与乳腺炎病原体化脓链球菌相似,一种乳腺炎病原体可能具有传染性和环境性两种特性。在传统上被认为是环境性乳腺炎病原体中,停乳链球菌的行为与大肠埃希菌和肺炎克雷伯菌不同。凝固酶阴性葡萄球菌(CNS)和除无乳链球菌以外的链球菌在趋势模型上存在差异。时间序列分析和聚类分析等多元统计技术可以成为评估乳腺炎病原体分离趋势的有力工具,因为它们能够应对连续数据的随机依赖性。此外,通过将它们分类为相对同质的组,还可以使用常规微生物检查提交的牛奶样本的结果来识别乳腺炎病原体的流行病学行为。

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Extensive Genomic Diversity among Bovine-Adapted Staphylococcus aureus: Evidence for a Genomic Rearrangement within CC97.牛源金黄色葡萄球菌的广泛基因组多样性:CC97内基因组重排的证据。
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