Kusuma School of Biological Sciences, Indian Institute of Technology Delhi, New Delhi, India.
J Membr Biol. 2013 Jul;246(7):557-70. doi: 10.1007/s00232-013-9568-1. Epub 2013 Jun 22.
Studies on the assembly of pure lipid components allow mechanistic insights toward understanding the structural and functional aspects of biological membranes. Molecular dynamic (MD) simulations on membrane systems provide molecular details on membrane dynamics that are difficult to obtain experimentally. A large number of MD studies have remained somewhat disconnected from a key concept of amphipathic assembly resulting in membrane structures--shape parameters of lipid molecules in those structures in aqueous environments. This is because most of the MD studies have been done on flat lipid membranes. With the above in view, we analyzed MD simulations of 26 pure lipid patches as a function of (1) lipid type(s) and (2) time of MD simulations along with 35-40 ns trajectories of five pure lipids. We report, for the first time, extraction of curvature preferences of lipids from MD simulations done on flat bilayers. Our results may lead to mechanistic insights into the possible origins of bilayer asymmetries and domain formation in biological membranes.
对纯脂质成分的组装进行研究,可以深入了解生物膜的结构和功能方面的机制。在膜系统上进行分子动力学(MD)模拟可以提供关于膜动力学的分子细节,而这些细节很难通过实验获得。大量的 MD 研究与形成膜结构的一个关键概念——两亲性组装有些脱节,导致脂质分子在水相环境中的结构形状参数。这是因为大多数 MD 研究都是在平面脂质膜上进行的。有鉴于此,我们分析了 26 个纯脂质斑块的 MD 模拟,其函数包括:(1)脂质类型;(2)MD 模拟时间;以及 5 种纯脂质的 35-40 ns 轨迹。我们首次从平面双层膜上的 MD 模拟中提取出脂质的曲率偏好。我们的研究结果可能有助于深入了解生物膜中双层不对称和域形成的可能起源。