Centro de Investigação em Química, Department of Chemistry and Biochemistry, Faculty of Science, University of Porto , Rua do Campo Alegre, 687, P-4169-007, Portugal.
J Phys Chem A. 2013 Jul 18;117(28):5826-36. doi: 10.1021/jp404938u. Epub 2013 Jul 9.
The enthalpy of hydrogenation of uracil was derived from the experimental enthalpies of formation, in the gaseous phase, of uracil and 5,6-dihydrouracil, in order to analyze its aromaticity. The enthalpy of formation of 5,6-dihydrouracil was obtained from combustion calorimetry, Knudsen effusion technique and Calvet microcalorimetry results. High-level computational methods were tested for the enthalpy of hydrogenation of uracil, but only with G3 was possible to obtain results in agreement with the experimental ones. It was found that uracil possesses 30.0% of aromatic character in the gaseous phase. Using both implicit, explicit, and hybrid solvation methods, it was possible to obtain a reference value for the enthalpy of hydrogenation of uracil in the aqueous solution and the effect of polarity and hydrogen bonds on the aromaticity of uracil was analyzed. The value of the hydrogenation enthalpy of uracil in aqueous solution was compared with the experimental value in the crystal phase, also dominated by polarity and hydrogen bonds, derived from combustion calorimetry results. The supramolecular effects on the crystal lattice were explored by the computational simulation of π-π staking dimers and hydrogen bonded dimers.
尿嘧啶的氢化焓是从尿嘧啶和 5,6-二氢尿嘧啶在气相中的生成焓实验值推导出来的,以便分析其芳香性。5,6-二氢尿嘧啶的生成焓是通过燃烧量热法、克努森扩散技术和 Calvet 微量量热法的结果获得的。我们还测试了高级计算方法来计算尿嘧啶的氢化焓,但只有 G3 能够得到与实验值相符的结果。结果表明,尿嘧啶在气相中具有 30.0%的芳香特征。使用隐式、显式和混合溶剂化方法,我们可以获得尿嘧啶在水溶液中的氢化焓的参考值,并分析极性和氢键对尿嘧啶芳香性的影响。我们将尿嘧啶在水溶液中的氢化焓值与来自燃烧量热法结果的在晶体相中的实验值进行了比较,晶体相也主要由极性和氢键决定。我们通过对 π-π 堆积二聚体和氢键二聚体的计算模拟探索了超分子效应对晶格的影响。