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叶酸与甘氨酸甜菜碱之间的弱相互作用方面

Aspects of Weak Interactions between Folate and Glycine Betaine.

作者信息

Bhojane Purva P, Duff Michael R, Bafna Khushboo, Rimmer Gabriella P, Agarwal Pratul K, Howell Elizabeth E

机构信息

Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee , Knoxville, Tennessee 37996-0840, United States.

Genome Science and Technology Program, University of Tennessee , Knoxville, Tennessee 37996-0840, United States.

出版信息

Biochemistry. 2016 Nov 15;55(45):6282-6294. doi: 10.1021/acs.biochem.6b00873. Epub 2016 Nov 1.

Abstract

Folate, or vitamin B, is an important compound in one-carbon metabolism. Previous studies have found weaker binding of dihydrofolate to dihydrofolate reductase in the presence of osmolytes. In other words, osmolytes are more difficult to remove from the dihydrofolate solvation shell than water; this shifts the equilibrium toward the free ligand and protein species. This study uses vapor-pressure osmometry to explore the interaction of folate with the model osmolyte, glycine betaine. This method yields a preferential interaction potential (μ/RT value). This value is concentration-dependent as folate dimerizes. The μ/RT value also tracks the deprotonation of folate's N3-O4 keto-enol group, yielding a pK of 8.1. To determine which folate atoms interact most strongly with betaine, the interaction of heterocyclic aromatic compounds (as well as other small molecules) with betaine was monitored. Using an accessible surface area approach coupled with osmometry measurements, deconvolution of the μ/RT values into α values for atom types was achieved. This allows prediction of μ/RT values for larger molecules such as folate. Molecular dynamics simulations of folate show a variety of structures from extended to L-shaped. These conformers possess μ/RT values from -0.18 to 0.09 m, where a negative value indicates a preference for solvation by betaine and a positive value indicates a preference for water. This range of values is consistent with values observed in osmometry and solubility experiments. As the average predicted folate μ/RT value is near zero, this indicates folate interacts almost equally well with betaine and water. Specifically, the glutamate tail prefers to interact with water, while the aromatic rings prefer betaine. In general, the more protonated species in our small molecule survey interact better with betaine as they provide a source of hydrogens (betaine is not a hydrogen bond donor). Upon deprotonation of the small molecule, the preference swings toward water interaction because of its hydrogen bond donating capacities.

摘要

叶酸,即维生素B,是一碳代谢中的一种重要化合物。先前的研究发现,在存在渗透溶质的情况下,二氢叶酸与二氢叶酸还原酶的结合较弱。换句话说,与水相比,渗透溶质更难从二氢叶酸溶剂化层中去除;这使平衡向游离配体和蛋白质物种方向移动。本研究使用蒸气压渗透压法来探究叶酸与模型渗透溶质甜菜碱的相互作用。该方法产生一个优先相互作用势(μ/RT值)。随着叶酸二聚化,该值与浓度相关。μ/RT值还跟踪叶酸N3 - O4酮 - 烯醇基团的去质子化,得出pK为8.1。为了确定叶酸的哪些原子与甜菜碱相互作用最强,监测了杂环芳香化合物(以及其他小分子)与甜菜碱的相互作用。使用可及表面积方法并结合渗透压测量,将μ/RT值解卷积为原子类型的α值。这使得能够预测诸如叶酸等更大分子的μ/RT值。叶酸的分子动力学模拟显示出从伸展型到L型的多种结构。这些构象异构体的μ/RT值在 - 0.18至0.09 m之间,其中负值表示优先被甜菜碱溶剂化,正值表示优先被水溶剂化。该值范围与渗透压和溶解度实验中观察到的值一致。由于预测的叶酸平均μ/RT值接近零,这表明叶酸与甜菜碱和水的相互作用几乎同样良好。具体而言,谷氨酸尾巴更倾向于与水相互作用,而芳香环更倾向于与甜菜碱相互作用。一般来说,在我们的小分子研究中,质子化程度越高的物种与甜菜碱的相互作用越好,因为它们提供了氢源(甜菜碱不是氢键供体)。小分子去质子化后,由于水的氢键供体能力,其优先与水相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d586/5198541/52acc44729c1/bi-2016-008737_0002.jpg

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