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韩国鳐(Hongeo koreana)(鳐形目,鳐科)的完整线粒体基因组。

The complete mitochondrial genome of the Korean skate: Hongeo koreana (Rajiformes, Rajidae).

作者信息

Jeong Dageum, Kim Sung, Kim Choong-Gon, Lee Youn-Ho

机构信息

Marine Ecosystem Research Division, Korea Institute of Ocean Science & Technology , 787 Haean-ro, Sangrok-gu, Ansan , Republic of Korea and.

出版信息

Mitochondrial DNA. 2014 Dec;25(6):437-8. doi: 10.3109/19401736.2013.809448. Epub 2013 Jul 8.

Abstract

The complete mitochondrial genome of the Korean skate, Hongeo koreana, the sole member of its genus, is investigated for the first time. The genome consists of 16,906 bp in length including 2 rRNA, 22 tRNA and 13 protein coding genes with the same gene order and structure of the genome as those of other Rajidae species. The overall nucleotide composition of the L-strand is A = 29.8%, C = 27.9%, T = 27.9% and G = 14.3%, showing a high A + T bias. The anti-G bias (6.0%) is more significant in the third codon position. Twelve of the 13 protein-coding genes use ATG as their start codon while the COX1 gene starts with GTG. For stop codon, ND3 and ND4 genes show incomplete stop codon T. The mitogenome sequence of H. koreana will provide important information on the evolution and the phylogenetic relation of the genus Hongeo in relation to the other genera of the family Rajidae.

摘要

首次对韩国鳐(Hongeo koreana)的完整线粒体基因组进行了研究,它是其属的唯一成员。该基因组长度为16,906 bp,包括2个rRNA、22个tRNA和13个蛋白质编码基因,其基因顺序和基因组结构与其他鳐科物种相同。L链的总体核苷酸组成为A = 29.8%、C = 27.9%、T = 27.9%和G = 14.3%,显示出较高的A+T偏向性。反G偏向性(6.0%)在第三密码子位置更为显著。13个蛋白质编码基因中有12个使用ATG作为起始密码子,而COX1基因以GTG开头。对于终止密码子,ND3和ND4基因显示不完全终止密码子T。韩国鳐的线粒体基因组序列将为Hongeo属与鳐科其他属的进化和系统发育关系提供重要信息。

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