Biometris, Wageningen University and Research Centre , Wageningen , The Netherlands ; Department of Mathematics, COMSATS Institute of Information Technology , Islamabad , Pakistan.
PeerJ. 2013 Jul 9;1:e95. doi: 10.7717/peerj.95. Print 2013.
Niche theory predicts that species occurrence and abundance show non-linear, unimodal relationships with respect to environmental gradients. Unimodal models, such as the Gaussian (logistic) model, are however more difficult to fit to data than linear ones, particularly in a multi-species context in ordination, with trait modulated response and when species phylogeny and species traits must be taken into account. Adding squared terms to a linear model is a possibility but gives uninterpretable parameters. This paper explains why and when generalized linear mixed models, even without squared terms, can effectively analyse unimodal data and also presents a graphical tool and statistical test to test for unimodal response while fitting just the generalized linear mixed model. The R-code for this is supplied in Supplemental Information 1.
生态位理论预测,物种的出现和丰度与环境梯度呈非线性、单峰关系。然而,与线性模型相比,单峰模型(如高斯(逻辑)模型)更难拟合数据,尤其是在多元物种排序中,具有特质调制响应,并且必须考虑物种系统发育和物种特征。向线性模型中添加平方项是一种可能性,但会给出不可解释的参数。本文解释了为什么以及何时广义线性混合模型(即使没有平方项)也可以有效地分析单峰数据,并介绍了一种图形工具和统计检验,用于在仅拟合广义线性混合模型的同时测试单峰响应。该 R 代码在补充信息 1 中提供。