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从与珊瑚 Porites astreoides 相关的复杂细菌共生体的深度筛选中得出的生态推论。

Ecological Inferences from a deep screening of the Complex Bacterial Consortia associated with the coral, Porites astreoides.

机构信息

Department of Biological Sciences, Florida International University, Miami, Fl, 33199, USA.

Department of Biology, University of Louisiana, Lafayette, LA, 70504, USA.

出版信息

Mol Ecol. 2013 Aug;22(16):4349-4362. doi: 10.1111/mec.12392. Epub 2013 Jul 19.

Abstract

The functional role of the bacterial organisms in the reef ecosystem and their contribution to the coral well-being remain largely unclear. The first step in addressing this gap of knowledge relies on in-depth characterization of the coral microbial community and its changes in diversity across coral species, space and time. In this study, we focused on the exploration of microbial community assemblages associated with an ecologically important Caribbean scleractinian coral, Porites astreoides, using Illumina high-throughput sequencing of the V5 fragment of 16S rRNA gene. We collected data from a large set of biological replicates, allowing us to detect patterns of geographical structure and resolve co-occurrence patterns using network analyses. The taxonomic analysis of the resolved diversity showed consistent and dominant presence of two OTUs affiliated with the order Oceanospirillales, which corroborates a specific pattern of bacterial association emerging for this coral species and for many other corals within the genus Porites. We argue that this specific association might indicate a symbiotic association with the adult coral partner. Furthermore, we identified a highly diverse rare bacterial 'biosphere' (725 OTUs) also living along with the dominant bacterial symbionts, but the assemblage of this biosphere is significantly structured along the geographical scale. We further discuss that some of these rare bacterial members show significant association with other members of the community reflecting the complexity of the networked consortia within the coral holobiont.

摘要

细菌在珊瑚礁生态系统中的功能作用及其对珊瑚健康的贡献在很大程度上仍不清楚。解决这一知识空白的第一步依赖于对珊瑚微生物群落及其在珊瑚物种、空间和时间上多样性变化的深入描述。在这项研究中,我们专注于探索与加勒比生态重要的石珊瑚 Porites astreoides 相关的微生物群落组合,使用 Illumina 高通量测序 16S rRNA 基因 V5 片段。我们从大量的生物学重复数据中收集信息,使我们能够检测地理结构模式,并使用网络分析来解析共同发生模式。解析出的多样性的分类分析显示,两个与 Oceanospirillales 目相关的 OTU 始终存在且占据优势,这证实了这种珊瑚物种以及许多其他属的珊瑚中出现的特定细菌关联模式。我们认为这种特定的关联可能表明与成年珊瑚宿主存在共生关系。此外,我们还鉴定出一个高度多样化的稀有细菌“生物圈”(725 个 OTU),也与优势细菌共生体一起生活,但这个生物圈的组合沿着地理尺度显著结构化。我们进一步讨论了其中一些稀有细菌成员与群落中的其他成员存在显著关联,反映了珊瑚整体共生体中网络共生体的复杂性。

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