Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA.
PLoS Genet. 2013;9(7):e1003617. doi: 10.1371/journal.pgen.1003617. Epub 2013 Jul 11.
The metabolic capabilities and regulatory networks of bacteria have been optimized by evolution in response to selective pressures present in each species' native ecological niche. In a new environment, however, the same bacteria may grow poorly due to regulatory constraints or biochemical deficiencies. Adaptation to such conditions can proceed through the acquisition of new cellular functionality due to gain of function mutations or via modulation of cellular networks. Using selection experiments on transposon-mutagenized libraries of bacteria, we illustrate that even under conditions of extreme nutrient limitation, substantial adaptation can be achieved solely through loss of function mutations, which rewire the metabolism of the cell without gain of enzymatic or sensory function. A systematic analysis of similar experiments under more than 100 conditions reveals that adaptive loss of function mutations exist for many environmental challenges. Drawing on a wealth of examples from published articles, we detail the range of mechanisms through which loss-of-function mutations can generate such beneficial regulatory changes, without the need for rare, specific mutations to fine-tune enzymatic activities or network connections. The high rate at which loss-of-function mutations occur suggests that null mutations play an underappreciated role in the early stages of adaption of bacterial populations to new environments.
细菌的代谢能力和调控网络已经通过进化进行了优化,以响应每种物种在其天然生态位中存在的选择压力。然而,在新环境中,相同的细菌可能由于调控限制或生化缺陷而生长不良。通过获得新的细胞功能(通过功能获得突变)或通过细胞网络的调节,适应这些条件可以进行。通过对转座子诱变的细菌文库进行选择实验,我们表明,即使在极端营养限制的条件下,仅通过功能丧失突变就可以实现大量的适应,这些突变重新布线了细胞的代谢,而没有获得酶或感觉功能。对 100 多种条件下的类似实验进行系统分析表明,对于许多环境挑战,都存在适应性的功能丧失突变。我们借鉴了大量已发表文章中的例子,详细说明了功能丧失突变产生这种有益的调控变化的一系列机制,而不需要罕见的、特定的突变来微调酶活性或网络连接。功能丧失突变的高发生率表明,在细菌种群适应新环境的早期阶段,无效突变发挥了被低估的作用。